BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1084.p
         (454 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093556|ref|YP_001098631.1| choline monooxygenase [Herminii...    55   9e-09

>gi|134093556|ref|YP_001098631.1| choline monooxygenase
           [Herminiimonas arsenicoxydans]
          Length = 366

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 35  DIFTNPELFELEMKHIFESNWVYLAHESQIPNNNDYYTTWIGRQPVVITRDKNGELNALI 94
           +++ +  L + E++ +F     Y  HE  +PN  D+ T     +  ++ R+  G +  L 
Sbjct: 20  NVYFDEALLKQEIQQLFRDGPRYAGHELMVPNVGDFATLAWENEGRMLVRNPQG-IELLS 78

Query: 95  NACAHKGAMLCRRKHGNKSSFTCPFHGWTFSNSGKLLKVKDEKNTEYPVSFNKDGSHDLT 154
           N C H+ A +   + G+ S+  CP H WT+   G+L+             F +    +L+
Sbjct: 79  NVCRHRQAKMFNGR-GHASNIVCPLHRWTYDLKGELIGAP---------HFGETPCLNLS 128

Query: 155 KVARFKSYRGFLFGSLNPDVLPLEEYLGETRVIIDQIVDQAPNGLEVLRGNSSYIYDGNW 214
                +++ G LF     DV  +   LG T+ +         + +EV   N       NW
Sbjct: 129 NTP-LQNWNGLLFERNGVDVAKILGNLGVTKDL--DFSGYMLDHIEVHDCNY------NW 179

Query: 215 KMQMENGCDGYHVSTVH 231
           K  +E   + YHV   H
Sbjct: 180 KTFIEVYLEDYHVEPFH 196


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 911,223
Number of extensions: 38726
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 369
Effective length of database: 720,272
Effective search space: 265780368
Effective search space used: 265780368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)