BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1081.p
         (278 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094710|ref|YP_001099785.1| putative transport protein [Her...   196   1e-51
gi|134095305|ref|YP_001100380.1| putative permease [Herminiimona...   182   2e-47

>gi|134094710|ref|YP_001099785.1| putative transport protein
           [Herminiimonas arsenicoxydans]
          Length = 435

 Score =  196 bits (498), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/280 (39%), Positives = 181/280 (64%), Gaps = 2/280 (0%)

Query: 1   MVAVPVSSVIGSPLSGLLMEHMNGFHAMHGWQWLFLVEGVPAVGLGILCLFMLKDKVADA 60
           M+ +P++ V+G PLSG +M H  G +  +GWQWLFL+E +P++ LG++ LF L + +  +
Sbjct: 156 MIGIPIAGVVGGPLSGWIMNHFAGANGWYGWQWLFLLEAIPSLLLGVITLFYLPNTIRAS 215

Query: 61  KWLSSEEKATIKAQLAQDDSKKA-THSFSAALASGRLWHLAFLYFCIALGNLGVTFWLPS 119
            WLS  EK  ++  +AQD S  + +HS +    + ++W +A +YFC  +G  G++F+LP+
Sbjct: 216 TWLSENEKQVLEENIAQDGSDTSKSHSVAGVFTNPKVWLMAAIYFCCMMGLYGISFYLPT 275

Query: 120 LLRDAGVQSTSTIGWLAAIPFLFSAIVMVLVGRSADARAERRYHLAIPMVVGALGLVLAS 179
           L++ +GV+    +G L AIP+    I  +LV RSAD   ERR+H AI   +G LGL L++
Sbjct: 276 LVKASGVKDALDVGLLTAIPYTCGVIATLLVARSADRMRERRWHFAIASALGGLGLFLST 335

Query: 180 -WMPNLPLLILMLTIATAGLTTALPMFWPLPSAILGGSAMAGGLAVLNSAGALAGFVGPS 238
            +  N+ L +L L++ TAG+ + +P+FW  PSAILGG+A A G+ ++NS G LAGFV PS
Sbjct: 336 VYGDNVVLALLALSLGTAGMLSTMPVFWTYPSAILGGAAAAAGIGLINSVGNLAGFVSPS 395

Query: 239 AIGYIRMNFAVPSLPLWLMAGIVLIGALTVASIPKSQVNR 278
            +G+++      +  ++ +AG ++IGA      P++ VN+
Sbjct: 396 IVGWLKDVTGSTNAGMYFVAGALVIGAGLALLQPRALVNK 435


>gi|134095305|ref|YP_001100380.1| putative permease [Herminiimonas
           arsenicoxydans]
          Length = 450

 Score =  182 bits (461), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 172/291 (59%), Gaps = 15/291 (5%)

Query: 1   MVAVPVSSVIGSPLSGLLMEHMNGFHAMHGWQWLFLVEGVPAVGLGILCLFMLKDKVADA 60
           M+ +P+S V+G P++G  +  ++G +   GWQWLF +EG+PA+ LG++  ++L D+ + A
Sbjct: 162 MLGMPISGVLGGPIAGWALNSLDGVNGWEGWQWLFFIEGLPAILLGLMVYWILCDEPSQA 221

Query: 61  KWLSSEEKATIKAQLAQDDSK---KATHSFSAALASGRLWHLAFLYFCIALGNLGVTFWL 117
           KWL+  E+A I   +  D +    +  HS  +AL   R++ L+  YF    G   + FWL
Sbjct: 222 KWLTERERALIIRNVKVDQANNPPEHGHSMLSALKDSRVYILSLSYFTFISGIYAIGFWL 281

Query: 118 PSLLRDAGVQSTSTIGWLAAIPFLFSAIVMVLVGRSADARAERRYHLAIPMVVGALGL-V 176
           P++L++AGV     IG  + IPF  SAI MVL+ RS+D R ERR+HLA+   +GA  L  
Sbjct: 282 PAMLKNAGVIDVFQIGLYSMIPFGISAIGMVLISRSSDKRLERRWHLALCAFIGAASLSA 341

Query: 177 LASWMPNLPLLILMLTIATAGLTTALPMFWPLPSAILGGS-AMAGGLAVLNSAGALAGFV 235
           +  +  +L + ++++T+AT  + T LP+FW + SA   G+ A AG +A++NS G + G  
Sbjct: 342 ITMFSADLTMSLIVMTVATTAIYTLLPLFWSITSAYFTGTVAAAGSIALINSLGLIGGMA 401

Query: 236 GPSAIGYIRMN--------FAVPSLPLWLMAGIVLIGALTVASIPKSQVNR 278
            PS IG+++          FA+ ++   ++ GIVL+  +    I + ++ +
Sbjct: 402 SPSIIGWVKTTTGSMSNGLFAISAML--VLGGIVLLVGIKAKDIRERKLAK 450


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 536,887
Number of extensions: 21414
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 278
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 198
Effective length of database: 736,747
Effective search space: 145875906
Effective search space used: 145875906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)