BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1080.p (289 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arse... 148 3e-37 gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arse... 148 3e-37 gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arse... 148 3e-37 gi|134094371|ref|YP_001099446.1| transposase [Herminiimonas arse... 148 3e-37 gi|134093805|ref|YP_001098880.1| transposase [Herminiimonas arse... 148 3e-37 >gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 12/277 (4%) Query: 1 VEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWR 60 V C L V+ S + YA R P C R + L + + + R YGA +VW Sbjct: 15 VALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWH 69 Query: 61 QLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQ 119 L G VERLM+ Q L+ R + L R + P + ++RQF A PN+ Sbjct: 70 DLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNR 129 Query: 120 LWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGN 178 WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A++ R +PE Sbjct: 130 KWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE-- 187 Query: 179 GGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAP 238 ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ K E + R+ Sbjct: 188 -SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM- 245 Query: 239 WKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 274 ++TR+ + +++ ++N R ++GYI P + E Sbjct: 246 FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 12/277 (4%) Query: 1 VEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWR 60 V C L V+ S + YA R P C R + L + + + R YGA +VW Sbjct: 15 VALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWH 69 Query: 61 QLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQ 119 L G VERLM+ Q L+ R + L R + P + ++RQF A PN+ Sbjct: 70 DLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNR 129 Query: 120 LWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGN 178 WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A++ R +PE Sbjct: 130 KWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE-- 187 Query: 179 GGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAP 238 ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ K E + R+ Sbjct: 188 -SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM- 245 Query: 239 WKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 274 ++TR+ + +++ ++N R ++GYI P + E Sbjct: 246 FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 12/277 (4%) Query: 1 VEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWR 60 V C L V+ S + YA R P C R + L + + + R YGA +VW Sbjct: 15 VALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWH 69 Query: 61 QLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQ 119 L G VERLM+ Q L+ R + L R + P + ++RQF A PN+ Sbjct: 70 DLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNR 129 Query: 120 LWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGN 178 WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A++ R +PE Sbjct: 130 KWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE-- 187 Query: 179 GGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAP 238 ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ K E + R+ Sbjct: 188 -SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM- 245 Query: 239 WKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 274 ++TR+ + +++ ++N R ++GYI P + E Sbjct: 246 FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134094371|ref|YP_001099446.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 12/277 (4%) Query: 1 VEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWR 60 V C L V+ S + YA R P C R + L + + + R YGA +VW Sbjct: 15 VALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWH 69 Query: 61 QLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQ 119 L G VERLM+ Q L+ R + L R + P + ++RQF A PN+ Sbjct: 70 DLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNR 129 Query: 120 LWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGN 178 WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A++ R +PE Sbjct: 130 KWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE-- 187 Query: 179 GGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAP 238 ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ K E + R+ Sbjct: 188 -SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM- 245 Query: 239 WKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 274 ++TR+ + +++ ++N R ++GYI P + E Sbjct: 246 FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134093805|ref|YP_001098880.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 12/277 (4%) Query: 1 VEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWR 60 V C L V+ S + YA R P C R + L + + + R YGA +VW Sbjct: 15 VALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSDRTYGARRVWH 69 Query: 61 QLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVNRQFKADRPNQ 119 L G VERLM+ Q L+ R + L R + P + ++RQF A PN+ Sbjct: 70 DLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLDRQFDASAPNR 129 Query: 120 LWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYAR-QPEGN 178 WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A++ R +PE Sbjct: 130 KWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMAVWRRGKPE-- 187 Query: 179 GGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAP 238 ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ K E + R+ Sbjct: 188 -SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKTERLSRKM- 245 Query: 239 WKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 274 ++TR+ + +++ ++N R ++GYI P + E Sbjct: 246 FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 555,690 Number of extensions: 22245 Number of successful extensions: 72 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 9 Length of query: 289 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 208 Effective length of database: 733,452 Effective search space: 152558016 Effective search space used: 152558016 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)