BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1078.p
         (150 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094710|ref|YP_001099785.1| putative transport protein [Her...   192   6e-51
gi|134095305|ref|YP_001100380.1| putative permease [Herminiimona...   175   8e-46

>gi|134094710|ref|YP_001099785.1| putative transport protein
           [Herminiimonas arsenicoxydans]
          Length = 435

 Score =  192 bits (488), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 105/127 (82%)

Query: 18  YRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHLQFSDAVYGLGAGIFFIGYFIFEV 77
           Y K+T ++LPFL ICY  AYLDRVNV FAKL M   LQFS+ VYGLGAGIFFIGYF+FEV
Sbjct: 20  YAKVTLRLLPFLFICYVAAYLDRVNVGFAKLSMLNDLQFSETVYGLGAGIFFIGYFLFEV 79

Query: 78  PSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQFYVMRFLLGAAEAGFFPGVLLYL 137
           PSN+IM RVGA+ WI+RIM+TW +LSA   FVT+   FYV+RFLLG AEAGFFPG++LYL
Sbjct: 80  PSNIIMHRVGARVWIARIMITWSVLSAATMFVTSPTMFYVIRFLLGVAEAGFFPGIVLYL 139

Query: 138 SYWFPPA 144
           +YWFP +
Sbjct: 140 TYWFPSS 146


>gi|134095305|ref|YP_001100380.1| putative permease [Herminiimonas
           arsenicoxydans]
          Length = 450

 Score =  175 bits (444), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 105/130 (80%)

Query: 13  ETTGIYRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHLQFSDAVYGLGAGIFFIGY 72
           E T  Y K+T++++PFL ICY  AYLDR +++FA++QM   L FS A+YGLGAGIFFIGY
Sbjct: 21  EETVAYSKVTWRLIPFLFICYIVAYLDRTSISFAQMQMQNDLGFSAAIYGLGAGIFFIGY 80

Query: 73  FIFEVPSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQFYVMRFLLGAAEAGFFPG 132
            +FEVPSN++M+R+GA++ + RIMV WG+++ GM FVTT  QFYVMRFLLG  EAGFFPG
Sbjct: 81  SLFEVPSNMLMQRIGARKTLLRIMVLWGIVATGMMFVTTPMQFYVMRFLLGVFEAGFFPG 140

Query: 133 VLLYLSYWFP 142
           V+ +L+ W+P
Sbjct: 141 VIYFLTKWYP 150


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.145    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 241,529
Number of extensions: 7526
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 76
Effective length of database: 756,517
Effective search space: 57495292
Effective search space used: 57495292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 124 (52.4 bits)