BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1077.p (308 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 74 9e-15 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 73 2e-14 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 69 3e-13 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 65 6e-12 gi|134093718|ref|YP_001098793.1| LysR family transcriptional reg... 64 1e-11 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 73.9 bits (180), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 14 LRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYGQAFE 73 LR+F+A+ GS RAA+S+HLTQS +++ ++RLE QV L R + T G+ Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLL 66 Query: 74 PYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQWPGLQVRVE 133 YA I D A++++A G KG +++G + + +S + + +++ V Sbjct: 67 RYAHRIAQLMDEAMEQIAQSAG--KGEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEVS 124 Query: 134 EGLAQELAVWLAKGEIDLAV 153 G++ EL +GE+DLA+ Sbjct: 125 SGMSHELWQRFQRGELDLAL 144 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 12/245 (4%) Query: 11 LSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYGQ 70 L QL+ F +AR+ S RAAE LHLTQ ++ +++LE+ LFE+ + LT G Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 71 AFEPYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQWPG--- 127 Y+ I+ + A + +G+ G + V AV SA P + G Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNV-AVISAGDYFFPRLLVEFARSHQGVTL 168 Query: 128 -LQVRVEEGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRPQEGCKVVASLDHPLR 186 L V EGL +LA L DLA+ PT D+ + E +VA+ DH L Sbjct: 169 NLSVHNREGLLNQLANNLT----DLAIMVRPPT--DMDTINEPFAPHPYVIVAAPDHHLV 222 Query: 187 AKGNLKKEDLLTAKWVMPPRKLGPREDWQQWFLDSNLEAPPVTVETRAVDAMRSMVVQCG 246 +K N+ L+ +V+ + + F S ++ + +E ++ + ++ V+ Sbjct: 223 SKKNIPMSTLIHEPFVVREKGSDTWHSMEDGF-GSRIDDLNIAMEIKSTETIKQAVIAGM 281 Query: 247 FLSWL 251 +S+L Sbjct: 282 GISFL 286 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 122/263 (46%), Gaps = 37/263 (14%) Query: 11 LSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYGQ 70 L++L+ +A+AR G AAE+ H+ Q L+ +++LE+++ LFER S + +T Sbjct: 3 LTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMT---- 58 Query: 71 AFEPYASLIVGEADNAIKELAALRGLEK-------GLIKVGAVGSALAGIVPEAVSCLLS 123 P IV +A+ +++ AA++ + K G ++G + + ++P V ++ Sbjct: 59 ---PLGVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIE 115 Query: 124 QWPGLQVRVEEGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRPQEGCKVVASLDH 183 + P + + ++E +L L +GEID A+ ++P D L+V+ E V H Sbjct: 116 RVPQMPLVLQENFTVKLLEQLRQGEIDAAIV-ALPIP-DQGLLVQPVYDEPFVVAVPKHH 173 Query: 184 PLRAKGNLKKEDLLTAKWVMPPRKLGPREDWQQWFLDSNLEAPPV-------------TV 230 P + ++ ++L + ++ LG F D LE P T Sbjct: 174 PWAERSSVTTDNLKSETMLL----LG----NGHCFRDQVLEVCPEMSRFSTSGDGIARTF 225 Query: 231 ETRAVDAMRSMVVQCGFLSWLPQ 253 E +++ +R MV ++ LPQ Sbjct: 226 EGSSLETIRHMVASGIGITVLPQ 248 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 6/195 (3%) Query: 10 DLSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYG 69 DL+ L F+ GS+ AE HL+ + + ++ +EE + PL R G+ T G Sbjct: 4 DLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPVG 63 Query: 70 QAFEPYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQWPGLQ 129 +A +A + + + + EL+ KG +++ + +L +PEA+S L+ P + Sbjct: 64 KALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNVN 123 Query: 130 VRVEEGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRP--QEGCKVVASLDHPLRA 187 + +EE L+ E+ L +G ID+ + + + D S E+ P + +V + DHPL Sbjct: 124 IDLEERLSFEIVSALTEGTIDIGI---LSDSVDFS-GFETFPFHDDRLTLVVARDHPLSV 179 Query: 188 KGNLKKEDLLTAKWV 202 + ++ + L ++ Sbjct: 180 RSSIHFAETLDYDFI 194 >gi|134093718|ref|YP_001098793.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 72/154 (46%), Gaps = 17/154 (11%) Query: 10 DLSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYG 69 D+ R F+ I R GS AA LH+TQ+ +T +Q LE Q+ LF R +G LT G Sbjct: 2 DIELARTFLYIVRSGSFIAAATRLHVTQTTVTARVQNLESQLGCSLFVRNRAGARLTDDG 61 Query: 70 QAFEPYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQW---- 125 + F YAS +V D A ++L G L A+GS ++ P L+ QW Sbjct: 62 ERFVRYASQLVQTWDAARRDLPLPDGYGDSL----ALGSEVSLCNP-----LMLQWTMQL 112 Query: 126 ----PGLQVRVEEGLAQELAVWLAKGEIDLAVTF 155 P +RVE G L L G +D A+ + Sbjct: 113 RRALPSHAIRVEVGDGSSLQSKLEHGLLDAALVY 146 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 562,787 Number of extensions: 21977 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 9 Length of query: 308 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 227 Effective length of database: 733,452 Effective search space: 166493604 Effective search space used: 166493604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)