BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1074.p
         (397 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094917|ref|YP_001099992.1| L-lactate dehydrogenase [Hermin...   280   8e-77

>gi|134094917|ref|YP_001099992.1| L-lactate dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 381

 Score =  280 bits (716), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 221/372 (59%), Gaps = 7/372 (1%)

Query: 6   NVADYRELAKKRLPKIVFDYLDGGAEDEFGLERNRREFDNILFRPRRLVDVSKRSVATAL 65
           N+ D R LA+KR+P++ +DY D G+  E     N  +F  + FR R  V++  R++ T +
Sbjct: 6   NIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANSEDFARMKFRQRVAVNMENRTLKTTM 65

Query: 66  FGKHIAAPMVIAPTGLNGVFWPHGDIALAQAAARFGIPFALSTASTTTIEDVARASDGEL 125
            G+ +  P+ IAPTGL G+    G+I  A+AA +FGIPF LST S  +IED+A  +    
Sbjct: 66  VGQEVHMPVAIAPTGLTGMQHADGEILAARAAEKFGIPFTLSTMSICSIEDIAAHTSKPF 125

Query: 126 WFQLYVVH-RKLAELLVKRALQAGYTTLILTTDVGVNGKRERDMRNGFGMPMKYTMKTAI 184
           WFQLYV+  R   E L++RA  A  + L+LT D+ + G+R +D++NG   P K T+   +
Sbjct: 126 WFQLYVMKDRPFIERLIERAKAAKCSALVLTLDLQILGQRHKDLKNGLSAPPKLTIPNIL 185

Query: 185 DGILHPRWTWDLLTNGMPQLANF---ASDQVQDTELQAALMSRQMDASFSWSDLKWLRDM 241
           + +  PRW   +L        N    ASD V D    +A  S+Q D + SW D++W++  
Sbjct: 186 NMMGKPRWCMGMLGTRRRSFGNIVGHASD-VSDMSSLSAWTSQQFDLALSWKDVEWIKKC 244

Query: 242 WPHKLLVKGLSREDDVARCASLGIDGVILSNHGGRQLDSAIAPIQALPQ--SSAATQLPV 299
           W  KL++KG+   +D     + G D +I+SNHGGRQLD A++ I ALP    +   Q+ V
Sbjct: 245 WGGKLIIKGIMDAEDARLAVASGADAIIVSNHGGRQLDGALSSIAALPSIVEAVGDQIEV 304

Query: 300 LLDSGVRRGSDIVKAVALGADAVLLGRATLYGLAARGQTGVTEVLNLLKSEIDTTLAQIG 359
            +D G+R G D++KA+ALGA    +GR+ LYGL A G+ GV++ L +++ E+D T+A  G
Sbjct: 305 HMDGGIRSGQDVIKALALGAKGTYIGRSFLYGLGAMGEEGVSKCLEIIERELDLTMAFCG 364

Query: 360 CADINELSRDFI 371
             D+ ++ R  +
Sbjct: 365 LTDVKKVDRKIL 376


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 712,858
Number of extensions: 28023
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 313
Effective length of database: 723,567
Effective search space: 226476471
Effective search space used: 226476471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)