BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1073.p (526 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Hermini... 134 1e-32 gi|134094465|ref|YP_001099540.1| acetolactate synthase III large... 117 2e-27 gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxyla... 105 5e-24 >gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Herminiimonas arsenicoxydans] Length = 582 Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 147/570 (25%), Positives = 242/570 (42%), Gaps = 72/570 (12%) Query: 3 TVHQASYALLREQGMTTFFGNPGSNELPFLKDFPKD--FRYILGLHEGAVVGMADGYAQA 60 T QA+ +++++G+ FG PG+ PF K ++IL H MA+GY +A Sbjct: 5 TAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTRA 64 Query: 61 TSKPAFVNLHSAA-GTGNAMGALANAWNSHTPLVVTAGQQVRPMIGVEALLANVDSAMLP 119 + V L ++ G + + L +A P++ GQ R + E A VD + Sbjct: 65 KAGNIGVALATSGPGGTDMITGLYSAIADSIPILCVTGQAPRARLHKEDFQA-VDIESIS 123 Query: 120 RPLVKWSCEPASAQEVPLALSRAIHTARSGAPGPVYVSVPYD----------DWAQPVGP 169 +P+ KWS VP +A H RSG PGPV + +P+D D +P+ P Sbjct: 124 KPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYEPL-P 182 Query: 170 GIEHLASRSVSSATIPAPLQLESVLSALAKAQNPVLIVGPDVDAAHANRDAVTLAEKLGM 229 + ASR Q+E +S L +A+ P+LI G V + A+ AE + + Sbjct: 183 VYKPAASRK----------QIERAISMLNEAERPLLISGGGVINSDASALMQEFAELVNV 232 Query: 230 PVWMAPSAPRC-SFPTDHQCFQGLLPAGIATIGRL----MEGHDLVLVVGAPVFRYHQYD 284 PV P+ + P DH G++ G+ T R M D +G R+ Sbjct: 233 PV--VPTLMGWGTVPDDHPLMVGMV--GLQTSHRYGNATMLASDFAFGIGN---RWANRF 285 Query: 285 PG--EFLPNGTKLIQITCDINEATRAPFGD--AIIADIGPTLKALAEGAAKSGRPLPAVK 340 G + K + I + + R FG I +D G LK + E AK + +K Sbjct: 286 TGSIDVFTKDRKFVHIDIEPTQIGRV-FGPDLGITSDAGAALKLMIE-VAKELKAAGKLK 343 Query: 341 KRPEPAPE--------------QPGPLAPERVFDILDAVAPRDAVYVNESTSTTNIMWQR 386 R E P+ P+RV+ ++ V + A YV+ + Q Sbjct: 344 NRDAWLAECQERKRTMLRKTDFDVTPIKPQRVYQEMNEVFGKTARYVSNIGLSQIAAGQF 403 Query: 387 LRL-KEQGSYFFAAAGGLGFALPAAVGIQLAHKDRRVIGVIGDGSANYGIQALWTAAQYN 445 L + KE+ AG LG+++PAA+G++ A ++ + GD + I+ L AQ+N Sbjct: 404 LHVYKERNWINCGQAGPLGWSVPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFN 463 Query: 446 IPTIFVIMKNGTYGALRWFAGVLKVDDVPGLDVP----------GLDFCALAKGYGVKSY 495 +P I V++ N G +R + +D L G+D + +G+G K+ Sbjct: 464 LPYIHVLVNNSYLGLIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGFGCKAI 523 Query: 496 RANSSESFTAALKSAL----DTNEPVLIEV 521 R + + AL+ A + PV++E+ Sbjct: 524 RVYNPDDIQPALRKAQEWIKEFKVPVVVEI 553 >gi|134094465|ref|YP_001099540.1| acetolactate synthase III large subunit [Herminiimonas arsenicoxydans] Length = 579 Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 135/538 (25%), Positives = 223/538 (41%), Gaps = 58/538 (10%) Query: 12 LREQGMTTFFGNPGSNELPFLKD--FPKD-FRYILGLHEGAVVGMADGYAQATSKPAFVN 68 L E+G+ FG PG L ++ D + +D F++IL HE A V AD Y++++ K Sbjct: 23 LAEEGVEHVFGYPGGAVL-YIYDAIYNQDKFQHILVRHEQAAVHAADAYSRSSKKVGVSI 81 Query: 69 LHSAAGTGNAMGALANAWNSHTPLVVTAGQQVRPMIGVEALLANVDSAMLPRPLVKWSCE 128 + S G NA+ LA A+ P+V+ +GQ IG++A D+ + RP VK + Sbjct: 82 VTSGPGVTNAVTGLATAYMDSIPMVIISGQVPTHGIGLDA-FQECDTVGITRPCVKHNFL 140 Query: 129 PASAQEVPLALSRAIHTARSGAPGPVYVSVPYD-DWAQPVGPGIEHLASRSVSSATIPAP 187 +++ + +A + A +G PGPV V +P D + + + + RS Sbjct: 141 VKDVRDLAATMKKAFYIATTGRPGPVLVDIPKDVSMHKCMFSYPKEVEMRSYKPVDKGHT 200 Query: 188 LQLESVLSALAKAQNPVLIVGPDVDAAHANRDAVTLAEKLGMPV---------WMAPSAP 238 Q+ + L +A+ P++ G V A+A+ + L +KLG P + A S Sbjct: 201 GQIRKAVQLLLQAERPMIYTGGGVILANASEELTQLVDKLGFPCTNTLMGLGSYRASSDK 260 Query: 239 RCSFPTDHQCFQGLLPAGIATIGRLMEGHDLVLVVGAPVFRYHQYDPGEFLPNGTKLIQI 298 P H G A +A M+ D+++ +GA +P F N K+I I Sbjct: 261 FVGMPGMH----GTYEANMA-----MQHSDVMIAIGARFDDRVIGNPKHFSSNPRKIIHI 311 Query: 299 TCDINE-ATRAPFGDAIIADIGPTL-KALAEGAAKSGRP-----------LPAVKKRPEP 345 D + + R I+ ++ L + LA+ A +P + +KR Sbjct: 312 DIDPSSISKRVKVDIPIVGNVKEVLVELLAQLDAAEAKPNSVALSNWWKQINEWRKRDCL 371 Query: 346 APEQPGP-LAPERVFDILDAVAPRDAVYVNESTSTTNIMWQRLRLKEQGSYFFAAAGGL- 403 E + P+ V + V DA S + MW + +GGL Sbjct: 372 KFENSTTVIKPQSVIQKVWDVTKGDAFVT--SDVGQHQMWAAQYYPFDKPRRWINSGGLG 429 Query: 404 --GFALPAAVGIQLAHKDRRVIGVIGDGSANYGIQALWTAAQYNIPTIFVIMKNGTYGAL 461 G LP A+G+Q+A+ D V + G+ S IQ L T QY++ +++ N G + Sbjct: 430 TMGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMV 489 Query: 462 RWFAGV--------LKVDDVPGLDVPGLDFCALAKGYGVKSYRANSSESFTAALKSAL 511 R + + +D +P DF L + YG + ALK A Sbjct: 490 RQWQQLEYGSRYSESYMDSLP-------DFDKLVEAYGHVGMTIENPADVDGALKEAF 540 >gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxylase [Herminiimonas arsenicoxydans] Length = 570 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 124/501 (24%), Positives = 212/501 (42%), Gaps = 58/501 (11%) Query: 56 GYAQA-----TSKPAFVNLHSAAGTGNAMGALANAWNSHTPLVVTAGQQVRPMIGVE-AL 109 GYA + T KP SA G N + ALANA + P+++ +G R ++ ++ Sbjct: 65 GYAASVAGYLTKKPGICVTVSAPGFLNGLTALANATTNCFPMILISGSSEREVVDLQQGD 124 Query: 110 LANVDSAMLPRPLVKWSCEPASAQEVPLALSRAIHTARSGAPGPVYVSVPYDDWAQPVGP 169 +D + RP K S +++ +A+ RAI TA SG PG VY+ +P ++ + Sbjct: 125 YEEMDQLNIARPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSA 184 Query: 170 GIEHLASRSV----SSATIPAPLQLESVLSALAKAQNPVLIVGPDVDAAHANRDAVTLAE 225 E S V + A IP P + ++ + A+ P++++G A + D L E Sbjct: 185 E-EGKKSLFVPVDPAPAQIPGPDAVARAVALIKGAKKPLILLGKGAAYAQCDADIKALIE 243 Query: 226 KLGMPVWMAPSAPRCSFPTDHQCFQGLLPAGIATIGRLMEGHDLVLVVGAPVFRYHQYDP 285 + G+P A QC A +++ D+V+++GA + + Sbjct: 244 ETGIPFTPMSMAKGLVSDIHPQC-------AAAARSMVLQESDVVVLIGARLNWLLAHGK 296 Query: 286 GEFLPNGTKLIQITCDINEA-TRAPFGDAIIADIGPTLKALAEGAAKSGRP---LPAVKK 341 G+ K +QI NE + P ++ D+ + AL G +P + A+ + Sbjct: 297 GKTWGGAKKFVQIDIQANEMDSNVPIAAPLVGDVESCVNALRAGLKGMTKPTEWMDAIAE 356 Query: 342 RPEPAPEQPG-PLAPE----RVFDILDAVAP-----RDAVYVNESTSTTN----IMWQRL 387 R + + G LA F+ L A+ +D VNE + + I+ Q Sbjct: 357 RASGSKAKLGTKLATATPIMNYFNSLGAIRDVLKNHQDVTLVNEGANALDNARMIIDQYQ 416 Query: 388 RLKEQGSYFFAAAG-GLGFALPAAVGIQLAHKDRRVIGVIGDGSANYGIQALWTAAQYNI 446 K + + G G+G A+ AAV + V+ V GD + + + T +YN+ Sbjct: 417 PRKRVDTGTWGVMGVGMGSAVAAAV-----ETGKPVVAVCGDSAFGFSGMEIETITRYNL 471 Query: 447 PTIFVIMKNGTYGALRWFAGVLKVDDV-PGLDV------PGLDFCALAKGYGVKSYRANS 499 P +IM NG G+ + D+ P V P + L + G + R N+ Sbjct: 472 PVTVIIMNNG---------GIYRGDEANPAHQVSCMTFNPNTRYDLLMQSVGGEGVRVNT 522 Query: 500 SESFTAALKSALDTNEPVLIE 520 E T AL+++L + +P LIE Sbjct: 523 PEELTKALEASLKSGKPTLIE 543 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,086,752 Number of extensions: 49189 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 3 Length of query: 526 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 440 Effective length of database: 716,977 Effective search space: 315469880 Effective search space used: 315469880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)