BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1072.p
         (297 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   164   6e-42

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  164 bits (414), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 167/304 (54%), Gaps = 15/304 (4%)

Query: 1   MNIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPT 60
           + +DLNL+R F AV   ++++ AA  L +TQP+VS +L+RLRD L D L  RT +G+ PT
Sbjct: 4   LTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVKPT 63

Query: 61  FNATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIA 120
             AT+L+   + A+ +++ A++    FD S +T  FR+A++D   + +LP+LVR +E  A
Sbjct: 64  SRATELWPVVRRALSDLETAVTPD-TFDVSRATTTFRMAMADATAALWLPFLVRAIEKEA 122

Query: 121 PSVGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGA-----------QILKRKLFTESYS 169
           P + + ++ + + +    L    ID A+G    V A           QI   +L+T  Y 
Sbjct: 123 PGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYV 182

Query: 170 CVVSTKHPTIGNSLSLEQYVAAKHVVVSPFTGH--HLVEDVMSEMGIKPIVALRVPHFTS 227
           CV+   HP     L+L+ Y AA H++VS F+G    L++D +SE+G +  + L V  F +
Sbjct: 183 CVMRKNHPLAKEELTLDTYCAAHHLLVS-FSGRAKGLMDDALSEVGRERRILLTVNQFFT 241

Query: 228 LLAVVATTDLMLTLPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWFC 287
              VVA++DL+  LP  +  S   + ++ +   P  +P   V++ W+       A +W  
Sbjct: 242 AGRVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHKWLR 301

Query: 288 ETII 291
           E +I
Sbjct: 302 EQLI 305


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 494,052
Number of extensions: 18009
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 216
Effective length of database: 733,452
Effective search space: 158425632
Effective search space used: 158425632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)