BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1071.p
         (281 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093623|ref|YP_001098698.1| putative 5-oxopent-3-ene-1,2,5-...   106   1e-24
gi|134094091|ref|YP_001099166.1| putative fumarylacetoacetate hy...   105   3e-24
gi|134094428|ref|YP_001099503.1| putative 5-carboxymethyl-2-hydr...   102   2e-23

>gi|134093623|ref|YP_001098698.1| putative
           5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
           [Herminiimonas arsenicoxydans]
          Length = 255

 Score =  106 bits (265), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 72  KFICIGLNYADHAAESNLPIPAEPVVFNKWTSAVVGPNDDVKIPRGSKKTDWEVELGVVI 131
           K I +  N+ + A + NL  P EP+   K  ++ + P + ++ P    K  +E ELG+VI
Sbjct: 57  KIIAMWNNFHELAKKLNLADPVEPLYLIKAPNSYLNPGETIQKPPTDDKVVFEGELGIVI 116

Query: 132 GKGGSYIDEKDAMSHVAGYCVVNDVSEREY--QIERGGTWDKGKGCDTFGPIGPWLVTRD 189
           GK    + E DAM +V GY V NDV+      + E    W + KG DTF P GP + T  
Sbjct: 117 GKTAKAVSEADAMDYVFGYTVANDVTVATILNRDESFAQWVRAKGLDTFCPFGPTIATD- 175

Query: 190 EVADPQKLGMWLEVDGKRYQNGNTSTMIFGVAHIVSYLSRFMSLQPGDVISTGTPPGVGM 249
              DP  L +   ++G   QN   S M F    +VS +S  M+L PGD+I  GT  GVG 
Sbjct: 176 --LDPTTLVVKTVLNGDVRQNYPISDMRFSTQQLVSMISADMTLFPGDIILCGTSVGVG- 232

Query: 250 GVKPEAVYLRAGQTMRLGIDGLGE 273
                   ++ G  + + I G+G+
Sbjct: 233 -------SMKPGSVVEVEIAGIGK 249


>gi|134094091|ref|YP_001099166.1| putative fumarylacetoacetate
           hydrolase family protein [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  105 bits (262), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 4/182 (2%)

Query: 70  IGKFICIGLNYADHAAESNLPIPAEPVVFNKWTSAVVGPNDDVKIPRGSKKTDWEVELGV 129
           + +  CIG NYA H  E       EP  F +     +  + D   P  +    +E EL V
Sbjct: 26  VHRIYCIGRNYAAHTIEMGHDPDKEPPFFFQKNPDNIIVDKDFPYPPETSDVHFEFELVV 85

Query: 130 VIGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQ---IERGGTWDKGKGCDTFGPIGPWLV 186
            + KGG  I  + A+ H+ GY V  D++ R+ Q    + G  W+ GK  +   P    L+
Sbjct: 86  ALAKGGKNITVEKALDHIFGYGVGLDMTRRDLQGVAKKMGRPWEVGKAFEHSAPCSA-LI 144

Query: 187 TRDEVADPQKLGMWLEVDGKRYQNGNTSTMIFGVAHIVSYLSRFMSLQPGDVISTGTPPG 246
              +V  P K G+W +V+G+  Q G+   MI+ VA  +S LS F  L+PGD+I TGTP G
Sbjct: 145 PVADVGHPHKGGIWFKVNGEVRQKGDLDQMIWKVAEQISILSTFFELKPGDLIMTGTPAG 204

Query: 247 VG 248
           VG
Sbjct: 205 VG 206


>gi|134094428|ref|YP_001099503.1| putative
           5-carboxymethyl-2-hydroxymuconate delta-isomerase
           [Herminiimonas arsenicoxydans]
          Length = 264

 Score =  102 bits (254), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 9/191 (4%)

Query: 70  IGKFICIGLNYADHAAE-SNLPIPAEPVVFNKWTSAVV----GPNDDVKIPRGSKKTDWE 124
           + +  CIG NYA HA E  + P    P  F K + ++     G   D   P  +K   +E
Sbjct: 56  VRRIYCIGRNYAAHAREMGSDPTREPPFFFQKPSDSIQYIAPGKTVDHPYPTLTKNYHYE 115

Query: 125 VELGVVIGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQI---ERGGTWDKGKGCDTFGPI 181
           +EL   I KGG  I  + A+ HV GY V  D++ R+ Q    +    W+ GK  D   PI
Sbjct: 116 IELVAAISKGGKNIPVETALQHVFGYAVGLDMTRRDLQAAMKKEEKPWEIGKSFDMSAPI 175

Query: 182 GPWLVTRDEVADPQKLGMWLEVDGKRYQNGNTSTMIFGVAHIVSYLSRFMSLQPGDVIST 241
           GP L     + +  +  +WL+V+G+  Q+ + + MI+ VA  +S LS+   LQPGD+I +
Sbjct: 176 GP-LHPVASIGNFTQGKIWLKVNGQVKQSSDLNKMIWSVAEQISNLSKAFELQPGDIIYS 234

Query: 242 GTPPGVGMGVK 252
           GTP  VG  V+
Sbjct: 235 GTPENVGPVVR 245


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 625,986
Number of extensions: 29121
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 281
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 200
Effective length of database: 733,452
Effective search space: 146690400
Effective search space used: 146690400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)