BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1070.p (250 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 125 2e-30 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 122 2e-29 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 116 1e-27 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 109 2e-25 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 96 2e-21 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 125 bits (314), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 131/240 (54%), Gaps = 6/240 (2%) Query: 9 RSAIITGGAQGFGYAVAERLLQ-GKAKVVLWDMDEKALAAARAKLEPLGNVETVRVDIAS 67 ++A+++GG +G G A+A L G A V + + A R ++ D++ Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAEFRKNT----SIPVFCWDVSD 58 Query: 68 QSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGAFYVNQVV 127 ++ Q+ I E IDILV++AGI ++ + +P +W VI+ +L F +++ V Sbjct: 59 YAQCQEGIRQVELDVGPIDILVNNAGIT-RDAVLHHMTPGQWIEVINTNLGSVFNMSRNV 117 Query: 128 VQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNIAVNAITP 187 ++ M +N+GRI+NI+S+ G+ G + Y+AAKAG+ TKSL E+A +NI VNAI P Sbjct: 118 IEGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAP 177 Query: 188 AAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDLSGGR 247 T ++ Q ++ +++ IP ++A +V +L + F T + FD++GG+ Sbjct: 178 GYCDTDMVSAIPQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVNGGQ 237 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 122 bits (306), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 1 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDEKALAAARAKLEPLGNVET 60 M + G+ A++TG ++G G A+A+ L + KV+ E AA L G + Sbjct: 1 MTTVELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESG--KG 58 Query: 61 VRVDIASQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGA 120 V +D+ + I+ +K ++ ILV++AGI Q+ EEW VI +L Sbjct: 59 VVLDVNDAARSVALIDEIQKEFGTVTILVNNAGIT-QDQLAMRMKDEEWDSVIATNLTSV 117 Query: 121 FYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNI 180 +++ V++ M+ +GRI+NI S+ G GN Y+AAKAG+ ++++L +E +RNI Sbjct: 118 GRLSRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNI 177 Query: 181 AVNAITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASV 240 VN + P T + + ++ I +L ++P R E++AA V++L S + S+ T + Sbjct: 178 TVNCVAPGFIDTDMTKTLSEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTT 237 Query: 241 FDLSGG 246 ++GG Sbjct: 238 LHVNGG 243 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 4/245 (1%) Query: 9 RSAIITGGAQGFGYAVAERLLQ-GKAKVVLWDMDEKALAAARAKLEPLG-NVETVRVDIA 66 R A++TGG G G A+ +L G V + A ++ G + D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 67 SQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGAFYVNQV 126 QQ + +K ID+LV++AGI ++ + +W V+ +L+ F + + Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGIT-RDMTFKKMEKTDWDAVMGTNLDSVFNMTKP 121 Query: 127 VVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNIAVNAIT 186 V M+ + +GRI+NI+S+ ++G + YSAAKAGM TK+L E A + + VN I+ Sbjct: 122 VCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 187 PAAAQTRILEQCTQAHIDY-MLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDLSG 245 P T+++ Q +D ++ +IP R K EE+A +VA+L S+E +F T + ++G Sbjct: 182 PGYIGTKMVTAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAING 241 Query: 246 GRATY 250 G+ Y Sbjct: 242 GQHMY 246 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 109 bits (272), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 128/261 (49%), Gaps = 16/261 (6%) Query: 1 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDM-DEKALAAARAKLEPLGNVE 59 M + QG++A+ITG G G +A L Q A +VL D +AA +A L V+ Sbjct: 1 MQNTTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQ 60 Query: 60 TV--RVDIASQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDL 117 + D++ E+ ++ S+DILV++AGI + + ++ E+W +I I+L Sbjct: 61 STYHPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVAD-IEDFPVEKWDAIIAINL 119 Query: 118 NGAFYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETAT 177 + AF+ ++ + M +N+GRI+NIAS G G+ SAY AAK G++ L+K E A Sbjct: 120 SSAFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQ 179 Query: 178 RNIAVNAITPAAAQTRILEQCT------------QAHIDYMLSKIPRARFVKVEELAAMV 225 + NAI P T ++++ A + K P FV E+L A+ Sbjct: 180 TGVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGALA 239 Query: 226 AWLVSEENSFTTASVFDLSGG 246 +L SE + + + + GG Sbjct: 240 VFLCSEAANQVRGAAWSMDGG 260 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 9/193 (4%) Query: 33 AKVVLWDMDEKALAAARAKLEPLGNV-ETVRVDIASQSEVQQAIEATEKLTQSIDILVHS 91 A+VVL L RA++E G V +D+ + ++ AI E +IDILV++ Sbjct: 4 AQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILVNN 63 Query: 92 AGIAGQNNPVAEYSPEEWRRVIDIDLNGAFYVNQVVVQRMIAQNYG------RIVNIASI 145 AG+A + + + +PEE+ V+D + GAF+V Q V +RMIA+ G RI+NIAS+ Sbjct: 64 AGVAARGR-LLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIASV 122 Query: 146 AGKEGNPTASAYSAAKAGMIALTKSLGKETATRNIAVNAITPAAAQTRILEQCTQAHI-D 204 AG P AYS +KA ++ +TK++ E I VNAI P T + ++ ++ Sbjct: 123 AGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQEYFKSEQGK 182 Query: 205 YMLSKIPRARFVK 217 +L +PR R K Sbjct: 183 LLLDALPRKRIGK 195 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.129 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 422,873 Number of extensions: 14582 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 11 Length of query: 250 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 171 Effective length of database: 740,042 Effective search space: 126547182 Effective search space used: 126547182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)