BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1069.p (548 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 462 e-131 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 462 e-131 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 461 e-131 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 363 e-101 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 359 e-100 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 462 bits (1189), Expect = e-131, Method: Compositional matrix adjust. Identities = 282/517 (54%), Positives = 352/517 (68%), Gaps = 7/517 (1%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 + N+KIG RL L FAV+L + ++ + +WRLQ +AQAT M E +ERL W+ Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRM-EEAAEQERLSIQWHAGN 61 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 + RTTA +S + + F + A S T Q +E+LI S+E K + +G R Sbjct: 62 SANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGDKR 121 Query: 124 KDYIKYRDAISKAKADGQP---EEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAA 180 Y+ R + K KADG P EEA +I+A D A + Y +Q ++D Q+ + Sbjct: 122 TVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEAKT 181 Query: 181 NIQQVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 + +Y R +L L + + L L A L+ ITRPLE AV+VA+ VA GDL RI+ Sbjct: 182 EVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNRIE- 240 Query: 241 KLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 SDETG+L+ AL M L + V +VR+G + I TAS++IA GNLDLS+RTE QA Sbjct: 241 --VNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQAS 298 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRK 360 +LEETAS+MEELTSTV QNA NARQANQLA SAS VA++GG VVSQV+ TM IN+S++K Sbjct: 299 SLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKK 358 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK L Sbjct: 359 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTL 418 Query: 421 IDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDM 480 I DSV KV GS+LV AG TM+EVV SV++V I++EI AAS EQS GI QVN AI M Sbjct: 419 IGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQM 478 Query: 481 DQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 DQ TQQNAALVE+AAAAAES+ EQA +L++ VS FKL Sbjct: 479 DQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 462 bits (1188), Expect = e-131, Method: Compositional matrix adjust. Identities = 277/520 (53%), Positives = 351/520 (67%), Gaps = 17/520 (3%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 N+KIG RL + F ++L + + + + RLQ +A+AT +M E KERL W + I Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIKGI 61 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 T+ RT A +++DP ++ +A S + QQ +E L+ S E K A + + R Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKR 121 Query: 124 KDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAANIQ 183 Y RD + + + + E +A AA Y+ ++ +++ Q N + + Sbjct: 122 ATYTAIRDDVMNLR-EARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKGRVD 180 Query: 184 QVYHESRNMMLALAV----LQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRI- 238 +Y +R +++ L + L +VL W+ RS IT+PL+ AV VA+ VA+GDLT RI Sbjct: 181 TIYQSARMLLIVLGLVALTLGIVLAWMLTRS----ITKPLDYAVSVARLVASGDLTGRIT 236 Query: 239 -DEKLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTER 297 D K DETG+L+ AL M +L + QVRSG D I TAS++IA+GNLDLS+RTE Sbjct: 237 VDSK-----DETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEE 291 Query: 298 QAGALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINAS 357 QA +LEETAS+MEELTSTV QNA NARQANQLA +AS VA++GG VVS+V+ TM IN S Sbjct: 292 QASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTS 351 Query: 358 SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 417 +RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI Sbjct: 352 ARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEI 411 Query: 418 KILIDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAI 477 K LIDDSV KV TGS+LV AG+TM EVV SV++V I+AEI AAS EQS GI QVN AI Sbjct: 412 KTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAI 471 Query: 478 NDMDQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 MDQ TQQNAALVE+AAAAAES+ EQAA L+Q VS FKL Sbjct: 472 GQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 461 bits (1187), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/514 (54%), Positives = 360/514 (70%), Gaps = 2/514 (0%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 +ANMKIG RL LGF +IL + + A I RL+ I A+ ++ + L+ ++ +W Sbjct: 3 IANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGT 62 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 + RT A+ K++DP +F + A S+ T QK+IE I SD+EK FA++ + R Sbjct: 63 SVNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKR 122 Query: 124 KDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAANIQ 183 YI R +I KA G EA +++ A Y+D ++ +L + +I Sbjct: 123 SAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADESIT 182 Query: 184 QVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDEKLA 243 Y R ++ AV+ ++LG L A L +GITRPL +A+ VA++VA GDLT R D +A Sbjct: 183 DDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSD--MA 240 Query: 244 ARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAGALE 303 DE G L+ AL M NL R V Q+R GTD I TASSEIA+GNLDLS+RTE+QA +LE Sbjct: 241 ETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLE 300 Query: 304 ETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRKIVD 363 ETAS+MEELTSTV QNA N+RQANQLA +AS+VA +GG VVSQV+ TMG+IN S++KIVD Sbjct: 301 ETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVD 360 Query: 364 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKILIDD 423 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI D Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGD 420 Query: 424 SVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDMDQT 483 SV KV GS+LV AG+TMDE+V V++VA I+AEI+AAS EQSDGI QVN A++ MDQ Sbjct: 421 SVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQV 480 Query: 484 TQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 TQQNAALVE+AAAAAES+Q+QA L++ VS F++ Sbjct: 481 TQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust. Identities = 255/539 (47%), Positives = 329/539 (61%), Gaps = 47/539 (8%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWY--- 60 NM +G +L F + A ++V + I+ + I ++ ++ L + D Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANIDL 61 Query: 61 ----RTIHTSVRRTTAIAKSADP-SLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTA 115 R + TT ++ + ++ Y A +A ++ AQ L SD K Sbjct: 62 LFIGRARGNVLLSTTEEERTLNKENIKKYLA---SAKENLAKAQ-----PLFVSDSAKAL 113 Query: 116 FAKLGQVRKDYIK--YRDAISKAKADGQPEEA-----------ARILAGPFDVAAKGYLD 162 FAK V +DY K +R + A AD +P + R+ A D + Sbjct: 114 FAKYATVSQDYEKEMWR---ALALADKEPLQQRSAELTTSMAQTRLHANTLD-------N 163 Query: 163 LLQQLLDLQRANIDQVAANIQQVYHESRNMMLALAVLQ----VVLGWLFARSLALGITRP 218 +L +L + Q +Q+Y SR M+ L +L ++LG L R+L + Sbjct: 164 VLTELSKQKEVRAAQAHVETEQLYDSSRAFMVLLVILSAFSGILLGVLITRNLKGQLGGE 223 Query: 219 LEQAVDVAQAVAAGDLTTRIDEKLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAIT 278 A VA +AAGDLT ID RS + ++ A+ M +LA IV QVRSGTD IT Sbjct: 224 PNYAAGVAARIAAGDLTVAID----LRSKDQTSMLFAMREMRDSLASIVSQVRSGTDTIT 279 Query: 279 TASSEIATGNLDLSARTERQAGALEETASAMEELTSTVSQNASNARQANQLAASASSVAQ 338 TAS +IA GNLDLS+RTE QA ALEETAS+MEE+TSTV QNA N++QA+ LA ASS A Sbjct: 280 TASGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAI 339 Query: 339 QGGDVVSQVISTMGSINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 398 +GG VVSQV+ TMGSI SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 340 RGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 399 Query: 399 VASEVRSLAQRSASAAKEIKILIDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAE 458 VASEVRSLAQRSASAAKEIK LI DSV KV GS+LV +AG+TM E+V +++VA I+++ Sbjct: 400 VASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSD 459 Query: 459 ISAASSEQSDGISQVNLAINDMDQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 I+AA EQS GI QVN AI MD+ TQQNAALVE+AAAA++S+Q+QA LS++VS FKL Sbjct: 460 ITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKL 518 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 233/426 (54%), Positives = 290/426 (68%), Gaps = 12/426 (2%) Query: 100 QKAIEALIESDEEKTAFAKLGQVRKDYIKYRD-AISKAKADGQPEEAARILAGPFDVAAK 158 +K + IE+ EE+ ++ R Y+K + + A G+ EE IL + Sbjct: 99 KKYLSLPIETLEERKVADEVTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQ 158 Query: 159 GYLDLLQQLLDLQRANIDQVAANIQQVYHESRNMMLALAVLQVVLGWL----FARSLALG 214 +L++LQ + + Q ++H R +AV+ V+LG + +A L Sbjct: 159 SLTKSTDELVELQMKSAATGYQDSQTLFHYFR----IIAVVGVLLGLIGVAIYAFFLIRA 214 Query: 215 ITRPLEQAVDVAQAVAAGDLTTRIDEKLAARSDETGKLMHALHTMTGNLARIVGQVRSGT 274 IT PL++ + +A+GDLT+ I+ K +E G LM L M L V QVR G+ Sbjct: 215 ITGPLKEMLLHFDTIASGDLTSNIEVK---SRNEMGTLMLGLQKMQKRLTDTVAQVREGS 271 Query: 275 DAITTASSEIATGNLDLSARTERQAGALEETASAMEELTSTVSQNASNARQANQLAASAS 334 AI+TA++EIA GNLDLS+RTE+QA +LEETAS+MEELTSTV QN NARQANQLA SAS Sbjct: 272 MAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSAS 331 Query: 335 SVAQQGGDVVSQVISTMGSINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 394 +VA +GG VVS V++TM +IN S+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 332 AVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 391 Query: 395 GFAVVASEVRSLAQRSASAAKEIKILIDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQ 454 GFAVVASEVRSLAQRSA+AAKEIK LIDDSV+KV G+ LV AG+TM EVV SV++V Sbjct: 392 GFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTD 451 Query: 455 IVAEISAASSEQSDGISQVNLAINDMDQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQ 514 I++EI AAS EQS GI QVN AI MD+ TQQNAALVEQAAAAA S+++QA LS VVS Sbjct: 452 IMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSV 511 Query: 515 FKLLAH 520 FKL H Sbjct: 512 FKLQGH 517 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.124 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 647,892 Number of extensions: 18638 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 15 Length of query: 548 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 462 Effective length of database: 716,977 Effective search space: 331243374 Effective search space used: 331243374 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)