BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1068.p (436 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiim... 644 0.0 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 119 3e-28 gi|134093857|ref|YP_001098932.1| putative two-component system s... 112 3e-26 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 106 2e-24 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 105 5e-24 >gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiimonas arsenicoxydans] Length = 430 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/423 (72%), Positives = 361/423 (85%) Query: 1 MSPQLLFWIPAVLRLVLCLGGAGVVGFFFGPIVGLVTAVLGVGAMMIAHLHYLLRLSTWL 60 M+PQLLFWIPA LRL L L +G+ +FFGP++GL A++ + A+++ L+YL +LS WL Sbjct: 1 MNPQLLFWIPAALRLSLVLIASGLTWYFFGPVIGLAVAIVCLLALIVIQLNYLYQLSGWL 60 Query: 61 DDAGQSRLPDGWGAWTDVYARLYRMHRDDEKNQAELTEWLARFRQAMSLLPDGVVIMDDV 120 + +LPDGWGAWTD+++RLYRM RDDE+N++ELTEWLARFRQAMSLLPDGVVIMDDV Sbjct: 61 EHPDSEKLPDGWGAWTDIFSRLYRMRRDDERNRSELTEWLARFRQAMSLLPDGVVIMDDV 120 Query: 121 LFLEWCNPSAQQHLGLKLDRDKGMRVTNLIRNPAFIDYIILGRYEQPLTLALHERKLIIQ 180 LFLEWCNP+A++HLGL RDKGMRVTNLIR+P FIDYIILG YEQPLTL+L +RKLI+Q Sbjct: 121 LFLEWCNPAAERHLGLNNGRDKGMRVTNLIRSPDFIDYIILGHYEQPLTLSLKDRKLIVQ 180 Query: 181 IIPFENRRQILVTHDVTESQRIDMMRRDFVANASHELRTPLTVINGFLEIALAQPNLDHA 240 IIPFENRRQILVTHD TES+RI+MMRRDF+ANASHELRTPLTVINGFLEIA AQP+LD A Sbjct: 181 IIPFENRRQILVTHDATESERIEMMRRDFIANASHELRTPLTVINGFLEIAQAQPDLDQA 240 Query: 241 TRTAHLKLMTEQGQRMQNLIDDMLTLTRLESIDYPLRSEVLRVRPLLERIAEEGRALSAG 300 R +HLKLM EQGQRMQNL++DMLTLTRLESIDYPLR E + + LLE+I +E ALS G Sbjct: 241 IRMSHLKLMIEQGQRMQNLVEDMLTLTRLESIDYPLRPEHVNIHNLLEQIRQEAEALSGG 300 Query: 301 KHDIRLIVDGPDLKGSADELRSAFTNLVTNAVRYTPEGGTITLRWESDEEGAHFSVQDTG 360 +H+I L +DGPD++GSADELRSAF+NLV+NAVRYTP G I ++W++ G FSV+DTG Sbjct: 301 RHEISLTIDGPDIEGSADELRSAFSNLVSNAVRYTPIHGRIDIKWQNTAAGPQFSVKDTG 360 Query: 361 IGISPEHISRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLDIASVPDHGSTFT 420 IG+ PEH+ RLTERFYRVDKSRSRETQGTGLGLAIV+HVLLRH A L I S PD GSTF+ Sbjct: 361 IGMRPEHLVRLTERFYRVDKSRSRETQGTGLGLAIVKHVLLRHGAVLAIESQPDVGSTFS 420 Query: 421 VHF 423 V F Sbjct: 421 VQF 423 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 119 bits (297), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 135/277 (48%), Gaps = 35/277 (12%) Query: 186 NRRQILVTHDVTESQRIDMM--------------RRDFVANASHELRTPLTVINGFLEIA 231 NR+ L+T ++ QR D+ + +VA SHELR+PL I G+ +I Sbjct: 92 NRQNELLTQEIEAHQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQIL 151 Query: 232 LAQPNLDHATRTAHLKLMTEQGQRMQNLIDDMLTLTRLESIDYPLRSEVLRVRPLLE--- 288 L +L A RTA ++ + G+ + L+D++L L R+E+ L + + LE Sbjct: 152 LKNEHLAAAPRTA-IQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDLL 210 Query: 289 ---RIAEEGRALS-----AGKHDIRLIVDGPDLKGSADELRSAFTNLVTNAVRYTPEGGT 340 R E + L GK ++ DG LR F NL+TNAVR+T + G+ Sbjct: 211 SMVRPQAEAKGLKLLCTYNGKISRYVLADG-------KRLRQIFINLLTNAVRFT-DDGS 262 Query: 341 ITLRWESDEEGAHFSVQDTGIGISPEHISRLTERFYRVDKSRSRETQGTGLGLAIVRHVL 400 +TL E F V DTGIGI+ + R+ + F R R R G GLGLAI ++ Sbjct: 263 VTLHVECSPASVRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLI 322 Query: 401 LRHHATLDIASVPDHGSTFTVHFPATQTIA-DYAPQQ 436 L + +L++ S+ GSTF V P T+ A + PQ+ Sbjct: 323 LLMNGSLNLVSMQGQGSTFIVRLPLTEITAFESLPQR 359 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 16/225 (7%) Query: 209 FVANASHELRTPLTVINGFLEIALAQPNLDHATRTAHLKLMTEQGQRMQNLIDDMLTLTR 268 F + +HE RTP+T + G ++AL +P + + M E+ +R+ +ID ML L R Sbjct: 252 FSTDLAHEFRTPVTSLLGQSQVALGRPRSADEYKQLVISNM-EELERLSRMIDSMLFLAR 310 Query: 269 LES-----IDYPL--RSEVLRVRPLLERIAEEGRALSAGKHDIRLIVDGPDLKGSADELR 321 +E YPL + E R+ E +++E + + + D ++ D A LR Sbjct: 311 VEREQMSVARYPLLVQDEFDRLCNFFEDMSDERGLILSNQGDGIVMAD-------AQLLR 363 Query: 322 SAFTNLVTNAVRYTPEGGTITLRWESDEEGAHFSVQDTGIGISPEHISRLTERFYRVDKS 381 A +NL++NA+R+ +G TI LR + E SV +TG I PEH+ L +RFYR D + Sbjct: 364 RALSNLLSNAIRHADKGSTIELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSA 423 Query: 382 RSRETQGTGLGLAIVRHVLLRHHATLDIASVPDHGSTFTVHFPAT 426 R+ ++ TGLGL+IVR ++ HH + S D + ++FP + Sbjct: 424 RTDSSESTGLGLSIVRAIMTLHHGRATVTS-QDKITHLELYFPTS 467 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 10/224 (4%) Query: 209 FVANASHELRTPLTVINGFLEIALAQPNLDHATRTAHLKLMTEQGQRMQNLIDDMLTLTR 268 F+A+ +H+LRTP+ + +E+AL + +L R L + +R+ L+ +L+L R Sbjct: 229 FIADTAHQLRTPVAGLKAHIELALRENDLTQVKRA--LGHLYTSAERLSRLVSQLLSLAR 286 Query: 269 LESIDYPLRSEVLRVRPLLERIAEEGRALSAGKH-DIRLIVDGPD--LKGSADELRSAFT 325 E + + + L R A+E L+ K D+ G L G A + Sbjct: 287 NEPNNVAVNFAPFDLNQLALRAAQEWVPLAYKKQIDLGFDTAGQPVLLNGEAARVTEMIN 346 Query: 326 NLVTNAVRYTPEGGTITLRWESDEEGAHFSVQDTGIGISPEHISRLTERFYRVDKSRSRE 385 NLV NA+RYTP GG +T+ DE AH V D G I E +R+ ERF+R+ S Sbjct: 347 NLVDNAIRYTPPGGRVTVHVRQDEH-AHLIVSDDGARIPVEERTRIFERFHRLLGSHE-- 403 Query: 386 TQGTGLGLAIVRHVLLRHHATLDIASVPDH-GSTFTVHFPATQT 428 +G+GLGLAIV + H+AT+ + D G+TFTV FP + Sbjct: 404 -EGSGLGLAIVHEIATLHNATITLEDDVDGVGNTFTVSFPVSHA 446 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 16/223 (7%) Query: 199 SQRIDMMRRDFVANASHELRTPLTVINGFLEIALAQPNLDHATRTAHLKLMTEQGQRMQN 258 SQ I + +R F+A+A+H+++TPL + E+AL Q DHA L+ + + + Sbjct: 269 SQSIKVQKR-FIADAAHQMKTPLAGMRMQSELALRQ--TDHAEIHKSLEQLAKSSKSATR 325 Query: 259 LIDDMLTLTRLESIDYPLRSEVLRVRPLLE--RIAEEGRALSAGKHDIRLIVDGPD---- 312 +++ +L L R E + +++ ++V L E R + ++ I L + PD Sbjct: 326 MVNQLLALARAE--NQTPQTKPMQVLELSELARDTVQNWVQTSFNRKIDLGFEQPDEAVM 383 Query: 313 LKGSADELRSAFTNLVTNAVRYTPEGGTITLRWESDEEG--AHFSVQDTGIGISPEHISR 370 +G A L NL+ NA+ YTP GG T+R +D++ A V+D G GI+P S Sbjct: 384 ARGDATMLHELLNNLIDNALSYTPAGGNATVRVRTDQQAGLAFLEVEDNGPGIAPHERSH 443 Query: 371 LTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLDIASVP 413 + ERFYR+ S +G+GLGLAIVR + L+H+A ++I + P Sbjct: 444 IFERFYRILGSN---VEGSGLGLAIVREIALQHNAEIEILNNP 483 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 798,279 Number of extensions: 32515 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 20 Length of query: 436 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 352 Effective length of database: 723,567 Effective search space: 254695584 Effective search space used: 254695584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)