BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1067.p (225 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 375 e-106 gi|134093754|ref|YP_001098829.1| two-component regulatory system... 303 5e-84 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 130 4e-32 gi|134093856|ref|YP_001098931.1| two-component system response r... 130 5e-32 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 119 1e-28 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 375 bits (964), Expect = e-106, Method: Compositional matrix adjust. Identities = 179/223 (80%), Positives = 198/223 (88%) Query: 3 TILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLH 62 TILIVEDEP I EL+ FTLK AGW+ V A AWDF+Q R PQL+LLDWMLPD+SGL Sbjct: 7 TILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLR 66 Query: 63 LLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRK 122 LLSRIRADRQ +L +IMLTAKSMEEDKIAGLDNGADDY+TKPFSPRELTARI ALLRRK Sbjct: 67 LLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRK 126 Query: 123 SPEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRV 182 +PEHAQ +M+AG I+LDP SCSVS++ +IDIGHAE+KLLKFFLAHPDRVFSRSQLLD+V Sbjct: 127 TPEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKV 186 Query: 183 WGDHVVIEERTVDVHVLRLRKALRDAECLIKTVRSVGYMLSTK 225 WGDHVVIEERTVDVHVLRLRKAL++AE LIKTVRSVGYMLS K Sbjct: 187 WGDHVVIEERTVDVHVLRLRKALKEAEHLIKTVRSVGYMLSEK 229 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 303 bits (776), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 147/223 (65%), Positives = 175/223 (78%) Query: 3 TILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLH 62 TIL+VEDE SI EL+ FTL++A W+ + AAAWD +Q R P L+LLDWMLPD+SGL Sbjct: 7 TILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPHLILLDWMLPDQSGLQ 66 Query: 63 LLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRK 122 LLSR+R RQ + L +IMLTAKSMEEDK+ GL+NGADDY+TKPFSPREL AR+ LL+ K Sbjct: 67 LLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLLKHK 126 Query: 123 SPEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRV 182 PEHAQE M AGPI LDPAS VS+ I IGHAE+KLLK+ LAHP+ V+SR QL+DRV Sbjct: 127 VPEHAQETMKAGPIRLDPASRMVSVGTKNITIGHAEFKLLKYLLAHPNHVYSRDQLIDRV 186 Query: 183 WGDHVVIEERTVDVHVLRLRKALRDAECLIKTVRSVGYMLSTK 225 WG H+ I+ERTVDV+VLRLRK L + LIKTVR VGYML+ K Sbjct: 187 WGRHIAIDERTVDVNVLRLRKVLGEGRYLIKTVRGVGYMLTEK 229 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 130 bits (328), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 10/228 (4%) Query: 6 IVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAP----QLVLLDWMLPDRSGL 61 ++ED+ +A ++A L + G+ + AA +QH + +VLLD MLPD GL Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 62 HLLSRIRA-DRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLR 120 + +IRA L L ++MLTAK D++ GL+ GADDYI KPF PREL AR++A+LR Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 121 RK--SPEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQL 178 R+ +P V+ G + +D + + LD + ++ LL RV SR QL Sbjct: 121 RQHTTPATDGHVLRFGRLEIDLDARMIRLDDQDKPVTSYQFNLLAAMAERAGRVLSREQL 180 Query: 179 LDRVWGDHVVIEERTVDVHVLRLRKALRDAECLIK---TVRSVGYMLS 223 +D V G+ + +R++DVH+ RLR A+ D K TVR GY+ + Sbjct: 181 MDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFA 228 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 130 bits (328), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 IL++EDEP I + + L E+G++ + N H A L++LD MLP SG L Sbjct: 3 ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWEL 62 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 L+ +R+ Q + VI LTA+ ED++ GL+ GADDY+ KPF+ EL ARI+ LLRR S Sbjct: 63 LTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR-S 121 Query: 124 PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 183 P ++ + G + +D V +G RI + E+ LL V SRS + +VW Sbjct: 122 PVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQVW 181 Query: 184 GDHVVIEERTVDVHVLRLRKALRD--AECLIKTVRSVGYMLSTK 225 + + +D V RLR + D LI T R +GY+ + Sbjct: 182 DINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYVCEVR 225 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 119 bits (299), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 4/221 (1%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 +LIVEDE E + L EAG++ +N L++LD MLPD G + Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGWKI 62 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 L +R + + LTA+ D++ GL+ GADDY+ KPF+ EL AR++ LLRR Sbjct: 63 LQALR--NAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 124 PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 183 P + M + LD A + + G R+ + + E+ LL+F + H V RS + ++W Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 184 GDHVVIEERTVDVHVLRLRKALRD--AECLIKTVRSVGYML 222 + + +DV + RLR + D LI T+R VGY+L Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVL 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 409,779 Number of extensions: 15670 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 23 Length of query: 225 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 147 Effective length of database: 743,337 Effective search space: 109270539 Effective search space used: 109270539 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)