BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1066.p
         (235 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094342|ref|YP_001099417.1| transcriptional repressor for h...   330   5e-92
gi|134093753|ref|YP_001098828.1| transcriptional repressor for h...   111   3e-26

>gi|134094342|ref|YP_001099417.1| transcriptional repressor for
           high-affinity phosphate uptake; PhoU protein in the
           phosphate regulon [Herminiimonas arsenicoxydans]
          Length = 236

 Score =  330 bits (845), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 194/229 (84%)

Query: 1   MTGDHSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRNGNLDVAHRVMKDDEAVNRL 60
           M G+HSSKQYD DLE IRSKVL MGG+VE+QFQDA+++F++GN+  A +V+K D+ VNRL
Sbjct: 1   MQGEHSSKQYDMDLETIRSKVLLMGGLVENQFQDAVSSFKSGNIAQAEQVIKVDQDVNRL 60

Query: 61  EVELDDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAIHLHKRGIGLV 120
           EV LDDACSHLIV+RQP ANDLRTVMATIK+I DLER+GDEATKIAR+A  + +RG+  +
Sbjct: 61  EVSLDDACSHLIVKRQPAANDLRTVMATIKVIIDLERIGDEATKIARSAKSITERGVTTI 120

Query: 121 SHYETVSLIAEQAMDQLRSALDAFARLDDQQAAELIKQDERIDHGFRSITRSLITFMMED 180
           +HYE + ++A  A + L  ALDAFARLD +QA +LI +DE ++H FRSI R+LITFMMED
Sbjct: 121 NHYEIIRVMASSAGNMLHDALDAFARLDGKQAIQLIAKDEVVNHEFRSIMRNLITFMMED 180

Query: 181 ARTISGSIDTLWVAKAIERIGDHAKNIAEYVVYVVGGKDIRHSDFAAAK 229
            RTIS ++DTLWVAKAIERIGDHAKNIAEYV+Y+V GKDIRH+D+ A++
Sbjct: 181 PRTISCALDTLWVAKAIERIGDHAKNIAEYVIYIVEGKDIRHTDYVASQ 229


>gi|134093753|ref|YP_001098828.1| transcriptional repressor for
           high-affinity phosphate uptake [Herminiimonas
           arsenicoxydans]
          Length = 227

 Score =  111 bits (278), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 111/209 (53%), Gaps = 1/209 (0%)

Query: 1   MTGDHSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRNGNLDVAHRVMKDDEAVNRL 60
           M+  H  K YD +L+ + S V AMG     QF DAI A    ++ +A RV+  D  V+ L
Sbjct: 1   MSTSHIVKSYDLELQTLASSVGAMGDFAGVQFADAIQALLAHDVSLAQRVIDQDRQVDAL 60

Query: 61  EVELDDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAIHLHKRGIGLV 120
             +L  A + +I +RQP A DL  V+A ++I+ DLER+GD A  IAR AI + +      
Sbjct: 61  RRDLSTAAAKVIAKRQPVAIDLDEVLAELRIVEDLERIGDLAKNIARRAIIIAEEPFP-A 119

Query: 121 SHYETVSLIAEQAMDQLRSALDAFARLDDQQAAELIKQDERIDHGFRSITRSLITFMMED 180
                +  +A+    QLR AL A+A  D  +A  L + D++ID     I   +   M   
Sbjct: 120 EVTGKIRRLADLTSAQLRHALAAYATRDGARAQTLERDDDQIDALHVEIFDDITALMKGS 179

Query: 181 ARTISGSIDTLWVAKAIERIGDHAKNIAE 209
            + + G +  L+ AK IERI DHA ++AE
Sbjct: 180 QQQVVGLVHLLFCAKNIERIADHATHLAE 208


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 416,673
Number of extensions: 15128
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 235
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 156
Effective length of database: 740,042
Effective search space: 115446552
Effective search space used: 115446552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)