BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1065.p (272 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-b... 479 e-137 gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding pr... 333 4e-93 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 130 5e-32 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 115 2e-27 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 114 4e-27 >gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 252 Score = 479 bits (1234), Expect = e-137, Method: Compositional matrix adjust. Identities = 226/251 (90%), Positives = 240/251 (95%) Query: 22 LKATLEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQ 81 +K TLE++ LNF+YG FQGLKNINL+I + KVTAFIGPSGCGKSTLLRTFNRMYDLYPGQ Sbjct: 2 IKKTLEIANLNFFYGTFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQ 61 Query: 82 RAEGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPMSVYDNIAFGIRLYENLPKGEM 141 RAEGKI+Y G NILEPGQD+NMLRAKVGMVFQKPTPFPMSVYDNIAFG+RLYENLPKGEM Sbjct: 62 RAEGKIMYHGKNILEPGQDVNMLRAKVGMVFQKPTPFPMSVYDNIAFGVRLYENLPKGEM 121 Query: 142 DERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDP 201 DERVEWALNKAALW EVKDKL+KSGLSLSGGQQQRLCIARGVAVKP+VLLLDEPTSALDP Sbjct: 122 DERVEWALNKAALWTEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPDVLLLDEPTSALDP 181 Query: 202 ISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRK 261 ISTAK+EELI ELK DYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNP +K Sbjct: 182 ISTAKIEELISELKGDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPNKK 241 Query: 262 ETQDYITGRFG 272 +TQDYITGRFG Sbjct: 242 DTQDYITGRFG 252 >gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding protein [Herminiimonas arsenicoxydans] Length = 281 Score = 333 bits (855), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 156/261 (59%), Positives = 195/261 (74%) Query: 12 STAPHNAAAALKATLEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTF 71 +T P N L+V LN +YG Q L +INLN+ G+V AFIGPSGCGKSTLLR F Sbjct: 21 ATTPVNPVDLNDVVLQVKDLNLFYGKTQALFDINLNVPRGQVLAFIGPSGCGKSTLLRCF 80 Query: 72 NRMYDLYPGQRAEGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPMSVYDNIAFGIR 131 NRM DL R EG++I G N+ E ++ LR +VGMVFQKP PFP ++Y+N+A+G+R Sbjct: 81 NRMNDLVDSCRVEGEVIVDGRNVYERSVNVAELRRRVGMVFQKPNPFPKTIYENVAYGLR 140 Query: 132 LYENLPKGEMDERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLL 191 L + ++DE VE +L +AALW EVKD+LH SGLSLSGGQQQRL IAR +A++PEVLL Sbjct: 141 LLGVKNRAQLDEVVERSLRQAALWDEVKDRLHSSGLSLSGGQQQRLVIARAIALEPEVLL 200 Query: 192 LDEPTSALDPISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGET 251 LDEP SALDPI+TAK+E+L+ +LK YTI IVTHNMQQAAR SD+T +M++G+LVEF T Sbjct: 201 LDEPCSALDPIATAKIEDLLDDLKQKYTIVIVTHNMQQAARVSDFTGFMFMGKLVEFSVT 260 Query: 252 DQIFMNPVRKETQDYITGRFG 272 DQ+F P K+T DYITGRFG Sbjct: 261 DQMFTQPTNKQTMDYITGRFG 281 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 130 bits (328), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 133/244 (54%), Gaps = 11/244 (4%) Query: 26 LEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 85 +E+ ++ +YG FQ L + ++ +G V GPSG GKSTL++T N L P Q+ G Sbjct: 2 IEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVN---GLEPFQK--G 56 Query: 86 KIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDER 144 I G ++ +P +L LR+++GMVFQ FP +S+ +N+ G + E ER Sbjct: 57 SITVDGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAER 116 Query: 145 VEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 204 L++ L + KDK LSGGQQQR+ IAR +A+ P +L DEPTSALDP Sbjct: 117 GLKYLDRVGLIAQ-KDKFPGQ---LSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMI 172 Query: 205 AKV-EELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKET 263 +V + ++G ++ T+ +VTH M A + ++ +M G +VE D+ F Sbjct: 173 NEVLDVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRA 232 Query: 264 QDYI 267 +D++ Sbjct: 233 RDFL 236 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 21/241 (8%) Query: 25 TLEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAE 84 ++EV +N +G F L +++L G++TA +GPSGCGK+TLLR + Q Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLE-----QPDH 56 Query: 85 GKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGE--- 140 G+++ G E ++ +VG VFQ F M+V++NIAFG+R+ + Sbjct: 57 GQVLLDG----EDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESV 112 Query: 141 MDERVEWALNKAAL-WGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSAL 199 + E+V L L W + D+ LSGGQ+QR+ +AR +AV+P VLLLDEP AL Sbjct: 113 IKEKVTKLLELVQLDW--LADRYPP---QLSGGQRQRIALARALAVEPRVLLLDEPFGAL 167 Query: 200 DPISTAKVEELIGELKNDYTIA--IVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMN 257 D ++ + L ++ + VTH+ ++A +D M G + + G ++ N Sbjct: 168 DAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNN 227 Query: 258 P 258 P Sbjct: 228 P 228 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 114 bits (286), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 128/247 (51%), Gaps = 17/247 (6%) Query: 24 ATLEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRA 83 A LE+ L +G + NI+L+I G+ +GPSGCGK+TLLR +D + Sbjct: 2 ALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAG-FD----EPD 56 Query: 84 EGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMD 142 GKI+ G ++ + ++R VFQ FP M+V NIAF + + N PK E+ Sbjct: 57 AGKILLDGVDLTGVPPEQRVVRT----VFQNYALFPHMTVAGNIAFPLEM-ANTPKSEIK 111 Query: 143 ERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPI 202 ++V+ AL L G H+ LSGGQ+QR+ IAR + +P++LLLDEP SALD Sbjct: 112 QKVDEALEDVRLTGFAARYPHE----LSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQ 167 Query: 203 STAKVE-ELIGELKN-DYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVR 260 +++ ELI K T VTH+ +A S A M G + + E +I+ P Sbjct: 168 LREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRS 227 Query: 261 KETQDYI 267 + D+I Sbjct: 228 RFVADFI 234 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 495,488 Number of extensions: 19837 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 46 Length of query: 272 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 192 Effective length of database: 736,747 Effective search space: 141455424 Effective search space used: 141455424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)