BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1064.p (297 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094340|ref|YP_001099415.1| phosphate ABC transporter perme... 449 e-127 gi|134093751|ref|YP_001098826.1| putative membrane protein compo... 81 8e-17 gi|134094339|ref|YP_001099414.1| phosphate ABC transporter perme... 54 7e-09 >gi|134094340|ref|YP_001099415.1| phosphate ABC transporter permease [Herminiimonas arsenicoxydans] Length = 290 Score = 449 bits (1154), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/288 (77%), Positives = 250/288 (86%) Query: 8 VEKAATAQVVNPVYRRRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVAALNLGLLT 67 ++ A + +NPVYR+RL+ HR+G+ SFLAM +GLF L WIL TL+ KGV A+NL + T Sbjct: 1 MKTEAIKETMNPVYRKRLLMHRVGITLSFLAMTVGLFFLLWILGTLLIKGVGAINLDIFT 60 Query: 68 ENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLAQVTRFVTD 127 + TP PG GGGL+N IVGSL+MVG + ISTPIGILAG+YLAEYGE S A+VTRFVTD Sbjct: 61 QTTPAPGSEGGGLMNAIVGSLLMVGAAVFISTPIGILAGIYLAEYGEVSWFAKVTRFVTD 120 Query: 128 IMLSAPSIVIGLFIYAIYVANVNHFSGWAGTFAISLIAIPVVVRTTDNMLKLVPSGLREA 187 IMLSAPSIVIGLFIYAIYVANV HFSGWAG+FAISLIAIPVVVRTTDNML LVP+ LREA Sbjct: 121 IMLSAPSIVIGLFIYAIYVANVKHFSGWAGSFAISLIAIPVVVRTTDNMLNLVPTSLREA 180 Query: 188 AFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFFSTNMNRPI 247 AFALGAPRW+VA VRLRAVKAGV+TGVLLAVARISGETAPLLFTALNNQF+S NMN P+ Sbjct: 181 AFALGAPRWRVATFVRLRAVKAGVITGVLLAVARISGETAPLLFTALNNQFYSANMNAPM 240 Query: 248 ANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQI 295 ANLPVVI QFAMSPYDNW SLAWGGALLITFSVL LN+LSR+LF Q+I Sbjct: 241 ANLPVVIYQFAMSPYDNWRSLAWGGALLITFSVLALNILSRSLFNQKI 288 >gi|134093751|ref|YP_001098826.1| putative membrane protein component of ABC phosphate transporter pstA-like [Herminiimonas arsenicoxydans] Length = 551 Score = 80.9 bits (198), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 29/258 (11%) Query: 57 GVAALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEES 116 G A LG P + GG+ I G+++MV + + I TP G++A VY+ EY ++ Sbjct: 275 GHYARKLGEFITEDPREANTEGGIFPAIFGTVLMVMMMSAIVTPFGVMAAVYMREYAKQG 334 Query: 117 KLAQVTRFVTDIMLSAPSIVIGLFIYAIYV----ANVNHF----SGWAGTFAISLI---- 164 L ++ R + + PSIV G+F +V N++ + A TF I Sbjct: 335 PLIRLIRISVNNLAGVPSIVYGVFGLGFFVYVLGGNIDQLFFPEALPAPTFGSPGILWAS 394 Query: 165 ------AIPVVVRTTDNMLKLVPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLA 218 +PVV+ +T+ L VP +RE + ALGA + + L ++TG++LA Sbjct: 395 LTLALLTLPVVIVSTEEGLSRVPRSVREGSLALGATKAETLWRTVLPMASPAMMTGLILA 454 Query: 219 VARISGETAPLLFTA---------LNNQFFSTNMNRPIANLPVVINQ--FAMSPYDNWVS 267 VAR +GE APL+ L+ F ++ R +L I F + Sbjct: 455 VARAAGEVAPLMLVGVVKLAPTLPLDGYFPFIHLERKFMHLGFHIYDVGFQSPNVEAARP 514 Query: 268 LAWGGALLITFSVLLLNV 285 L + ALL+ +++LN+ Sbjct: 515 LVYATALLLVIVIMVLNL 532 >gi|134094339|ref|YP_001099414.1| phosphate ABC transporter permease [Herminiimonas arsenicoxydans] Length = 342 Score = 54.3 bits (129), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 38/255 (14%) Query: 22 RRRLMQ----HRMGMLFSFLAMGLGLFVLAWILLTLVFKGVAALN---LGLLTENTPGPG 74 RR+ +Q H++ +F+ LFVL I+ +L+ AL L + P Sbjct: 34 RRQRLQDFLFHKITFIFALSV----LFVLLGIIASLMIGAWPALKEFGLPFIASVEWDPV 89 Query: 75 DAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLAQVTRFVTDIMLSAPS 134 + G IVG+L+ I+ LI+ PI ++L E + L + +++ PS Sbjct: 90 NDQYGAAIAIVGTLLTSFIALLIAFPISFGIALFLTEICP-AWLKRPLGTAVELLAGVPS 148 Query: 135 IVIG---LFIYAIYVANVNH----------------FSG-------WAGTFAISLIAIPV 168 I+ G LF++A A+ F G A ++++ IP Sbjct: 149 IIYGMWGLFVFAPLFADYIQPALAATLGNVPVIGQLFKGPMMGIGILAAGIILAVMIIPF 208 Query: 169 VVRTTDNMLKLVPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAP 228 + ++ ++VP L+E+A+ALG +W+V V L + GVV GV+L + R GET Sbjct: 209 IASVMRDVFEIVPPVLKESAYALGCTKWEVVRKVVLPYTRIGVVGGVMLGLGRALGETMA 268 Query: 229 LLFTALNNQFFSTNM 243 + F N S ++ Sbjct: 269 ITFVIGNAHKLSWSL 283 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 534,395 Number of extensions: 22329 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 4 Length of query: 297 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 216 Effective length of database: 733,452 Effective search space: 158425632 Effective search space used: 158425632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)