BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1063.p (345 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094339|ref|YP_001099414.1| phosphate ABC transporter perme... 514 e-147 gi|134093750|ref|YP_001098825.1| putative ABC transporter permea... 84 8e-18 gi|134094340|ref|YP_001099415.1| phosphate ABC transporter perme... 57 2e-09 gi|134093751|ref|YP_001098826.1| putative membrane protein compo... 55 5e-09 >gi|134094339|ref|YP_001099414.1| phosphate ABC transporter permease [Herminiimonas arsenicoxydans] Length = 342 Score = 514 bits (1325), Expect = e-147, Method: Compositional matrix adjust. Identities = 260/329 (79%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 18 SPTETESAQAARQK-LMAVMRRQRLQDFFFHKITLIFALSVLLMLGGIIVSLIIGAAPAF 76 +P + +S K LMA MRRQRLQDF FHKIT IFALSVL +L GII SL+IGA PA Sbjct: 14 NPDKEKSDSGVFSKALMATMRRQRLQDFLFHKITFIFALSVLFVLLGIIASLMIGAWPAL 73 Query: 77 QAFGPGFITRVEWDPTNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICPAKLR 136 + FG FI VEWDP N+++GA IAIVGTL TS IALLIAFP+SFGIALFLTEICPA L+ Sbjct: 74 KEFGLPFIASVEWDPVNDQYGAAIAIVGTLLTSFIALLIAFPISFGIALFLTEICPAWLK 133 Query: 137 RPLGTCVELLAGVPSIIYGMWGLFVFAPLFSEYGQPFLKSTLGQIPGIGVLFSGPTMGIG 196 RPLGT VELLAGVPSIIYGMWGLFVFAPLF++Y QP L +TLG +P IG LF GP MGIG Sbjct: 134 RPLGTAVELLAGVPSIIYGMWGLFVFAPLFADYIQPALAATLGNVPVIGQLFKGPMMGIG 193 Query: 197 ILTAGLILSVMIIPFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVG 256 IL AG+IL+VMIIPFI+SVMRDVFE+VP VLKESAY LGCT+WEVVRKVVLPYT+ GVVG Sbjct: 194 ILAAGIILAVMIIPFIASVMRDVFEIVPPVLKESAYALGCTKWEVVRKVVLPYTRIGVVG 253 Query: 257 GVMLGLGRALGETMAVTFVIGNSHRLSWSLFSAGNSIASTLANEIAEASSKLHVSSLFAL 316 GVMLGLGRALGETMA+TFVIGN+H+LSWSLFSAGNSIASTLANE AEA S LHVSSLFAL Sbjct: 254 GVMLGLGRALGETMAITFVIGNAHKLSWSLFSAGNSIASTLANEFAEAESVLHVSSLFAL 313 Query: 317 GLILFVITFIVLSAAKIMLMGMARKEGAK 345 GLILFVITFIVLSAAK+MLMGM+RKEGAK Sbjct: 314 GLILFVITFIVLSAAKLMLMGMSRKEGAK 342 >gi|134093750|ref|YP_001098825.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 753 Score = 84.3 bits (207), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 1/145 (0%) Query: 198 LTAGLILSVMIIPFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGG 257 L G+ + + P I S+ D VP L + LG T W+ + VVL G+ Sbjct: 605 LVVGIAMGFAVTPTIFSIAEDAIFTVPKHLTSGSLALGATSWQTLIGVVLLTASPGIFSA 664 Query: 258 VMLGLGRALGETMAVTFVIGNSHRLSWSLFSAGNSIASTLANEIAEAS-SKLHVSSLFAL 316 VM+GLGRA+GETM V GN+ + WSLF+ ++++ + E+ EA + H LF Sbjct: 665 VMIGLGRAVGETMIVLMATGNTAVMDWSLFTGFRTLSANIGVEMPEAGVGETHYRLLFLS 724 Query: 317 GLILFVITFIVLSAAKIMLMGMARK 341 L+LF TF+V + A+++ M K Sbjct: 725 ALVLFGFTFVVNTIAELIRQRMREK 749 >gi|134094340|ref|YP_001099415.1| phosphate ABC transporter permease [Herminiimonas arsenicoxydans] Length = 290 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 44/266 (16%) Query: 26 QAARQKLMAVMRRQRLQDFFFHK--ITLIF-ALSV-LLMLGGIIVSLIIGAAPAFQAFGP 81 +A ++ + V R++ L H+ ITL F A++V L L I+ +L+I A Sbjct: 4 EAIKETMNPVYRKRLLM----HRVGITLSFLAMTVGLFFLLWILGTLLIKGVGAINL--- 56 Query: 82 GFITRVEWDPTNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICP----AKLRR 137 T+ P + G M AIVG+L A+ I+ P+ ++L E AK+ R Sbjct: 57 DIFTQTTPAPGSEGGGLMNAIVGSLLMVGAAVFISTPIGILAGIYLAEYGEVSWFAKVTR 116 Query: 138 PLGTCVELLAGVPSIIYGMWGLFVFAPLFSEYGQPFLKSTLGQIPGIGVLFSGPTMGIGI 197 +++ PSI+ G LF++A + FSG Sbjct: 117 ---FVTDIMLSAPSIVIG---LFIYAIYVANVKH----------------FSG------- 147 Query: 198 LTAGLILSVMIIPFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGG 257 +S++ IP + ++ +VP L+E+A+ LG RW V V L K GV+ G Sbjct: 148 WAGSFAISLIAIPVVVRTTDNMLNLVPTSLREAAFALGAPRWRVATFVRLRAVKAGVITG 207 Query: 258 VMLGLGRALGETMAVTFVIGNSHRLS 283 V+L + R GET + F N+ S Sbjct: 208 VLLAVARISGETAPLLFTALNNQFYS 233 >gi|134093751|ref|YP_001098826.1| putative membrane protein component of ABC phosphate transporter pstA-like [Herminiimonas arsenicoxydans] Length = 551 Score = 55.1 bits (131), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 20/199 (10%) Query: 83 FITRVEWDP--TNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICP-AKLRRPL 139 FIT DP N E G AI GT+ ++ I P A+++ E L R + Sbjct: 284 FITE---DPREANTEGGIFPAIFGTVLMVMMMSAIVTPFGVMAAVYMREYAKQGPLIRLI 340 Query: 140 GTCVELLAGVPSIIYGMWGL--FVFAPLFSEYGQPFLKSTLGQIPGIGVLFSGPTMGI-G 196 V LAGVPSI+YG++GL FV+ L Q F L PT G G Sbjct: 341 RISVNNLAGVPSIVYGVFGLGFFVYV-LGGNIDQLFFPEAL----------PAPTFGSPG 389 Query: 197 ILTAGLILSVMIIPFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVG 256 IL A L L+++ +P + + VP ++E + LG T+ E + + VLP ++ Sbjct: 390 ILWASLTLALLTLPVVIVSTEEGLSRVPRSVREGSLALGATKAETLWRTVLPMASPAMMT 449 Query: 257 GVMLGLGRALGETMAVTFV 275 G++L + RA GE + V Sbjct: 450 GLILAVARAAGEVAPLMLV 468 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 522,426 Number of extensions: 18515 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 4 Length of query: 345 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 263 Effective length of database: 730,157 Effective search space: 192031291 Effective search space used: 192031291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)