BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1061.p
         (704 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094337|ref|YP_001099412.1| polyphosphate kinase [Herminiim...  1136   0.0  

>gi|134094337|ref|YP_001099412.1| polyphosphate kinase
           [Herminiimonas arsenicoxydans]
          Length = 705

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/700 (78%), Positives = 613/700 (87%), Gaps = 3/700 (0%)

Query: 1   MTRKAKPESSTQPELPANTIYLNRELSQLAFNRRVLAQAEDDSVPLLERLRYLCICSSNL 60
           M +KA PES++   LP + IYLNRELSQLAFNRRVLAQAE+ +VPLLERL+YLCI S+NL
Sbjct: 7   MHKKAIPESASASPLPQSAIYLNRELSQLAFNRRVLAQAENPAVPLLERLKYLCIVSNNL 66

Query: 61  DEFFEVRIASLLAN-RIEGEHTDPPELRAALERTSAECHRIVARQYELLNEEILPQLAAN 119
           DE FEVRIASLLAN  ++GE  +PP L AAL    AECH+IV RQY +LNEE+LPQLA  
Sbjct: 67  DELFEVRIASLLANNHLDGEVIEPPTLSAALAVAGAECHKIVERQYRVLNEEVLPQLAQQ 126

Query: 120 GIHLLRHDDRNEAQRAWVKQYFEQHVRPLLTPIGLDPAHPFPQVHNKSLNFIIELSGKDA 179
           GIHLLR  DRNEAQRAWVK YF++ VRPLLTPIGLDPAHPFPQV NKSLNFI+ELSGKDA
Sbjct: 127 GIHLLRDQDRNEAQRAWVKAYFDREVRPLLTPIGLDPAHPFPQVVNKSLNFIVELSGKDA 186

Query: 180 FGRGTGIVIIKAPRVLPRVIKLPDHLSAKGQSSFCLLSSVIHAHIADLFPGRDIMAYSQF 239
           FGRGT I I+KAPRVLPRVI+LP  LS  G  SFCLLSS+IHAHI DLF GRD++AYSQF
Sbjct: 187 FGRGTAIAILKAPRVLPRVIQLPAELSQNG-VSFCLLSSIIHAHIKDLFTGRDVLAYSQF 245

Query: 240 RVTRNSDLWVDEEEVKNLRQALETELQSRQFGVAVRLEVAANCPEHLSQFLLNQFNIEHN 299
           RVTRNSDLWVDEEEVKNLRQAL+ ELQSR FGVAVRLEVA NCP  LSQFLL QF+I+ N
Sbjct: 246 RVTRNSDLWVDEEEVKNLRQALQGELQSRNFGVAVRLEVAKNCPPRLSQFLLEQFSIDKN 305

Query: 300 RLYAVQGPVNMVRLGEIVNLVNQPELRFPPFSPTLPPQLASENIFDALDKKDVLLHHPFQ 359
           RLYAV GPVNMVRL E++  VNQPELRFPP+SPT PP+LA+ ++F A+ K DVLLHHPFQ
Sbjct: 306 RLYAVDGPVNMVRLSELIEHVNQPELRFPPYSPTYPPKLANVDLFGAIGKHDVLLHHPFQ 365

Query: 360 SFQPVVDFIRTAAHDPRVLAIKQTIYRTGMNSDLMEALIYAAQHGKEVTVIVELMARFDE 419
           SFQPV++FIR+AA DP V+AIKQTIYRTGMNSDLME+LI AAQ GKEVTVIVELMARFDE
Sbjct: 366 SFQPVLEFIRSAAQDPDVVAIKQTIYRTGMNSDLMESLIIAAQRGKEVTVIVELMARFDE 425

Query: 420 EANINWAVKLEQAGAQVVYGVVGLKTHAKLALVIRHDEDQGLRFYAHLGTGNYHPNTTKF 479
           EANINWA +LE+AGAQVVYGVVGLKTHAKLALVIR +E   LR+YAHLGTGNYHP+TTKF
Sbjct: 426 EANINWADRLERAGAQVVYGVVGLKTHAKLALVIRREEG-ALRYYAHLGTGNYHPSTTKF 484

Query: 480 YTDFGLLTSNQQLTAEVNEVFIHLTSLTKPRNLTQLWLAPFSLQKEIIRAIRNEGQIARE 539
           YTDFGLLT+N  L  EVNE+FIHLTSLTKP+ LT LWLAPF+LQKE IRAIRNE +IA+ 
Sbjct: 485 YTDFGLLTANPALATEVNEIFIHLTSLTKPKTLTHLWLAPFALQKEFIRAIRNEAKIAKA 544

Query: 540 GRPARIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSDNIKVRSIIG 599
           GRP RIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLS+NI+VRSI+G
Sbjct: 545 GRPGRIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSENIRVRSIVG 604

Query: 600 RYLEHSRIYYFRNDLAHDVYLASADWMNRNLFRRIEVAFPVLDKALKKRVISEGLNPYLK 659
           R+LEH+RIYYFRNDLAHD+YL+SADWMNRNLFRRIEVAFP+LD  LKKRVI+EGLNPYLK
Sbjct: 605 RFLEHTRIYYFRNDLAHDIYLSSADWMNRNLFRRIEVAFPILDPGLKKRVIAEGLNPYLK 664

Query: 660 DNTNSWLLDVNGVYTLKKPRNKQQCFNAQQHLMSTLGIPV 699
           DNTN+W LD NGVY  +KPR K   F+AQQ+LM  LG P+
Sbjct: 665 DNTNTWELDSNGVYQKRKPRGKAGAFSAQQYLMQVLGNPM 704


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,304,322
Number of extensions: 52262
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 616
Effective length of database: 710,387
Effective search space: 437598392
Effective search space used: 437598392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)