BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1059.p (586 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 419 e-118 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 397 e-112 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 384 e-108 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 375 e-105 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 366 e-102 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/592 (44%), Positives = 359/592 (60%), Gaps = 47/592 (7%) Query: 3 FKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINRQLSEERLPKTVAADNMLIWV 62 KN+SI+ +L + + + ++L+ G G+LG+ + + + ++P + A +M+ + Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRL 61 Query: 63 GRQRTSLDQAAMSLDAAWTERMYGMEANARKEALQWWDKYTALP--QTEEGKVLVKKVSD 120 + R L+ AM +ER+ N ++ + W KY +LP EE +KV+D Sbjct: 62 LQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEE-----RKVAD 116 Query: 121 GIAKTQVELDK-----FTQAIKSGERQAIAD-QARKVGQAYSAMQLDGQALNKYETEQAV 174 + ++ K A+++G + + D K+ + ++ L + + + A Sbjct: 117 EVTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAA 176 Query: 175 QSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDAIASGDLTQ 234 S + RI ++ +++GL+ + L RAI P++ L HFD IASGDLT Sbjct: 177 TGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTS 236 Query: 235 PVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDLSARTEQQA 294 + V S NEMG L+ GL +MQ+ L+ TV VR GS AI+TAT EIA+GNLDLS+RTEQQA Sbjct: 237 NIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQA 296 Query: 295 ASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTMEQIRESSS 354 ASLEETASSMEELTSTVK N DNARQA LA +AS +A G VV VV TM+ I S+ Sbjct: 297 ASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSAR 356 Query: 355 RITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSGAAKEIKD 414 +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ AAKEIK Sbjct: 357 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKH 416 Query: 415 LIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQ 474 LI SV +V AG+ LV +AG TM++V+ +V+RVTDIMSEI AAS EQSAGI+QV+ A+ Q Sbjct: 417 LIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQ 476 Query: 475 MDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVPPRAAAPRPVPK 534 MDE TQQNAALVEQA+AAA SL+ QA L V++F+ ++ P+ P+ PK Sbjct: 477 MDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFK-----LQGHQSAPQNLVPQARPK 531 Query: 535 AVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRATPVGDDGDWETF 586 A+ + PAA A T G+DGDWE F Sbjct: 532 ALE-----------------------SRPAAIA------HTGKGNDGDWEQF 554 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 397 bits (1019), Expect = e-112, Method: Compositional matrix adjust. Identities = 277/600 (46%), Positives = 368/600 (61%), Gaps = 45/600 (7%) Query: 3 FKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINRQLSEERLPKTVAADNMLIWV 62 KN++I++ L +LS+LL+A G+ GL + R + E+R + + Sbjct: 2 LKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRT----------VPI 51 Query: 63 GRQRTSLDQAAMS-LDAAWTERMYG--------MEANAR--KEALQWWDKYTALPQTEEG 111 G+ T + + ++ LD A + +YG M+A + KE Q +D + A T E Sbjct: 52 GQLNTVITLSTINQLDLAAS--IYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEA 109 Query: 112 KVLVKKVSDGIAKTQVELDKFTQAIKSGERQAIADQARKV-----GQAYSAMQLDGQALN 166 KVL K + A ++ L+K Q + R + ++ + + ++ AL Sbjct: 110 KVLADKFA---ADRKIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALI 166 Query: 167 KYETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDA 226 E +A ++ S R+ R SI AII G+LLA F + L R I P+ A++ + Sbjct: 167 DLELREAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARS 226 Query: 227 IASGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDL 286 +A+GDLTQ +HV+S+NE GQLLQ L M +SLS+TV AVR G+E I A+ EIASGN DL Sbjct: 227 VAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADL 286 Query: 287 SARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTM 346 S+RTE QA SLEETASSMEELTSTV+ NADNARQA L V+A+ +A G VV +VV TM Sbjct: 287 SSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITM 346 Query: 347 EQIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSS 406 I++SS +I DI+ +ID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+ Sbjct: 347 GSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 406 Query: 407 GAAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGID 466 GAAKEIK LI SV +V AGS+LV QAG TM +++ +V+ V DIMSEI++AS EQS GI+ Sbjct: 407 GAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIE 466 Query: 467 QVSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVPPRA 526 QV++A++QMDE TQQNAALVEQA+AAA+S+Q QA L VAIF+++ G + + A Sbjct: 467 QVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAG---GSAMSTSA 523 Query: 527 AAPRPVPKAVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRATPVGDDGDWETF 586 + R A P A P T AL AAP KP S A GD DWE F Sbjct: 524 STRR--------AAPALQAANPATTSRALTAAPHKQLETKPQKPIS-ADKSGD--DWEEF 572 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 384 bits (987), Expect = e-108, Method: Compositional matrix adjust. Identities = 269/600 (44%), Positives = 364/600 (60%), Gaps = 53/600 (8%) Query: 1 MSFKNLSIRAQLAIAFLVLSILLLALGVSGLLGM----SAAVSINRQLSEERLP----KT 52 M FKNL I +L +AF +L +L+ + V G+L + A V + +ERL K Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKG 60 Query: 53 VAADNMLIWVGRQRTSLDQAAMSLDAAWTERMYGMEANARKEALQWWDKYTALPQTEEGK 112 + + + + R RTS + D + M + A K+ D+ L + EGK Sbjct: 61 IETNTVRTF-ARVRTSDPEQ----DKILQQEMSAISAAVSKQ----QDELETLVVSAEGK 111 Query: 113 VLVKKVSDGIAK-TQVELD--KFTQAIKSGERQAIADQARKVGQAY--SAMQLDGQALNK 167 L+ V++ A T + D +A + + AIA++ + AY S + +N Sbjct: 112 KLLATVAEKRATYTAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSVEAVVNAQINN 171 Query: 168 YETEQA-VQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDA 226 +E + V ++ Y+++R+ I +V L L W L R+I +P+ A+ Sbjct: 172 FEDAKGRVDTI------YQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARL 225 Query: 227 IASGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDL 286 +ASGDLT + V S +E GQLLQ L M +SL+ ++ VR G + IATA+ +IASGNLDL Sbjct: 226 VASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDL 285 Query: 287 SARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTM 346 S+RTE+QA+SLEETASSMEELTSTVK NADNARQA LAV AS +A G VV +VV TM Sbjct: 286 SSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTM 345 Query: 347 EQIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSS 406 + I S+ +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ Sbjct: 346 DGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 405 Query: 407 GAAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGID 466 AAKEIK LI SV++V GS+LV +AG TM +V+ +V+RVTDIM+EI AAS EQSAGI+ Sbjct: 406 AAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIE 465 Query: 467 QVSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVPPRA 526 QV++A+ QMD+ TQQNAALVE+A+AAA+SL +QA L Q V+IF+++ G ++ V R Sbjct: 466 QVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLD-GVANSSRVATRL 524 Query: 527 AAPRPVPKAVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRATPVGDDGDWETF 586 PV AP T++ A AP K A+ PV D DWE F Sbjct: 525 --------------PVAASNAPATRQFAASPAP--------KKIANETRPVSGD-DWEEF 561 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/424 (54%), Positives = 287/424 (67%), Gaps = 17/424 (4%) Query: 165 LNKYETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHF 224 L YE E + + ++ Y + R+ I ++ +LL W L I P+ AL+ Sbjct: 167 LGHYENEVKLADESITD-DYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVA 225 Query: 225 DAIASGDLT-QPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGN 283 +++A GDLT + + +E G LL L RMQ +L RTV +R G++ IATA+ EIASGN Sbjct: 226 ESVAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGN 285 Query: 284 LDLSARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVV 343 LDLS+RTEQQA+SLEETASSMEELTSTVK NADN+RQA LAV AST+A G VV QVV Sbjct: 286 LDLSSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVV 345 Query: 344 QTMEQIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQ 403 TM I S+ +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR LAQ Sbjct: 346 DTMGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQ 405 Query: 404 RSSGAAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSA 463 RS+ AAKEIK LI SVE+V AGS+LV +AG TM +++ V+RV DIM+EI+AAS EQS Sbjct: 406 RSAAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSD 465 Query: 464 GIDQVSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVP 523 GI+QV++AV+QMD+ TQQNAALVE+A+AAA+SLQ QA+ L + V++FRV G A Sbjct: 466 GIEQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAA 525 Query: 524 PRAAAPRPVPKAVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAA-KPASRATPVGDDGD 582 PR + K P AAP+ K ++ + VT AA KP + GD D Sbjct: 526 PRTVQSTAMHK---------PLAAPVKKSSSSSSLTVTESKKVAAPKPVAAG---GD--D 571 Query: 583 WETF 586 WE F Sbjct: 572 WEEF 575 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust. Identities = 269/604 (44%), Positives = 360/604 (59%), Gaps = 57/604 (9%) Query: 1 MSFKNLSIRAQLAIAFLVLSILLLALGVSGLLGMS----AAVSINRQLSEERLPKTVAAD 56 M NL I +L +AF V+ +L+ ++ V G+ + A V + +ERL A Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAG 60 Query: 57 NMLIWVGRQRTSLDQAAMSLDAAWTERMYGMEANARK-EALQWWDKYTALPQTEEGKVLV 115 N + RT+ A + ++ + E A+ E + +K +L +EEGK L+ Sbjct: 61 NSANAI---RTT---ARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLM 114 Query: 116 KKVSDGIAKTQVELD--KFTQAIKSGERQAIADQARKV--------GQAYSAMQ---LDG 162 V D K V +D K +K+ A ++A+K+ + YS +D Sbjct: 115 SAVGD---KRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDF 171 Query: 163 QALNKYETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALR 222 Q + E + V +L Y + R+F ++ + L L+ W L R+I P++ A+ Sbjct: 172 QQVTFLEAKTEVDNL------YASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVE 225 Query: 223 HFDAIASGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASG 282 +A GDL + V+SS+E GQLLQ L M + L ++V VR G E IATA+ +IA+G Sbjct: 226 VARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAG 285 Query: 283 NLDLSARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQV 342 NLDLS+RTE+QA+SLEETASSMEELTSTVK NADNARQA LAV+AS +A G VVV QV Sbjct: 286 NLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQV 345 Query: 343 VQTMEQIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALA 402 V TME I S+ +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LA Sbjct: 346 VDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLA 405 Query: 403 QRSSGAAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQS 462 QRS+ AAKEIK LI SV++V GS+LV +AG TM +V+ +V+RVTDIMSEI AAS EQS Sbjct: 406 QRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQS 465 Query: 463 AGIDQVSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPV 522 AGI+QV++A+ QMD+ TQQNAALVE+A+AAA+SL +QA L + V++F+++ Sbjct: 466 AGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDG-------- 517 Query: 523 PPRAAAPRPVPKAVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRATPVGDDGD 582 AA P K V AP KRA PV+P AA GD + Sbjct: 518 ---VAASTPATKTVRKIAAAASHHAP-AKRAIAAPTPVSPKAATG----------GD--E 561 Query: 583 WETF 586 WE F Sbjct: 562 WEEF 565 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.124 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 694,378 Number of extensions: 22759 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 15 Length of query: 586 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 499 Effective length of database: 713,682 Effective search space: 356127318 Effective search space used: 356127318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)