BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1058.p (552 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 414 e-117 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 385 e-108 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 382 e-107 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 366 e-102 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 353 1e-98 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 414 bits (1065), Expect = e-117, Method: Compositional matrix adjust. Identities = 269/565 (47%), Positives = 353/565 (62%), Gaps = 20/565 (3%) Query: 2 MQHLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAALNMREAG 61 ++LKIG RL F L+L L + V+G+ R+ ++ + + E + A ++ Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKGIE 62 Query: 62 SALALALRKVVTPTDAAEGKTEDAHLGKILQAYAGYEKQLTDLSPGGRGKELLLATSGEG 121 + +V T +D + K + I A + + +L L GK+LL AT E Sbjct: 63 TNTVRTFARVRT-SDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLL-ATVAEK 120 Query: 122 KKLFPL----VGQIRQQVGSNNYFDAAQQLKSDFLPAHEKWMSSVAALASFQQEDMQQAH 177 + + V +R+ G+ A ++K PA + ++ SV A+ + Q + + A Sbjct: 121 RATYTAIRDDVMNLREARGAELQNAIANKMK----PAADAYIQSVEAVVNAQINNFEDAK 176 Query: 178 AQARDSYRKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLKRAGQIAETISRGDLTQHAQ 237 + Y+ A++ ++ +G++ L LG +++TRSI PL A +A ++ GDLT Sbjct: 177 GRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRIT 236 Query: 238 AQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHEIARGNVDLSNRTESQASSL 297 DE L+ L M +L A++ +V+ IA AS++IA GN+DLS+RTE QASSL Sbjct: 237 VDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSL 296 Query: 298 EETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRVVGDVVTTMGSIKESSGKIV 357 EETASSME+LTSTV+QNA NA+QANQL ++AS A KGG VV VV TM I S+ KIV Sbjct: 297 EETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIV 356 Query: 358 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIS 417 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLID 416 Query: 418 DSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAASQEQSAGIAEVNHAITQIDE 477 DSVDKVDTG KLV EAG TM E+V SVK+V DIM EI AASQEQSAGI +VN AI Q+D+ Sbjct: 417 DSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQ 476 Query: 478 ITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKLKTVLQVPTVP--VPLRSVNAPPAVT 535 +TQQNAALVE+AAAAA SL EQA LAQAV++FKL V V +P+ + NAP Sbjct: 477 VTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPVAASNAPATRQ 536 Query: 536 AAAKPA--------RLARDEEFEEF 552 AA PA R +++EEF Sbjct: 537 FAASPAPKKIANETRPVSGDDWEEF 561 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 274/577 (47%), Positives = 350/577 (60%), Gaps = 44/577 (7%) Query: 4 HLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAALNMREAGSA 63 +LKIG RL F ++L L +++VIG+WR+ E+ + + E A L+++ Sbjct: 5 NLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEE---AAEQERLSIQWHAGN 61 Query: 64 LALALRKVVTPTDAAEGKTEDAHLGKILQAYAGYEKQLTDLSPGGRGKELLLATSGEGKK 123 A A+R T A T + ++T L + K L S EGKK Sbjct: 62 SANAIR-----TTARIRSTNQEVQQQFQNEMTAQSVEITKL----QNKLESLIHSEEGKK 112 Query: 124 LFPLVGQ-------IRQQV------GSNNYFDAAQQL-KSDFLPAHEKWMSSVAALASFQ 169 L VG IR++V GS + A+++ S PA E + +V + FQ Sbjct: 113 LMSAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQ 172 Query: 170 QEDMQQAHAQARDSYRKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLKRAGQIAETISR 229 Q +A + + Y ++ +L +G + L L ++++RSI PL+ A ++A T++ Sbjct: 173 QVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAG 232 Query: 230 GDLTQHAQAQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHEIARGNVDLSNR 289 GDL + DE L+ L M L +++EV+ IA AS++IA GN+DLS+R Sbjct: 233 GDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSR 292 Query: 290 TESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRVVGDVVTTMGSI 349 TE QASSLEETASSME+LTSTV+QNA NA+QANQL +SAS A KGG VV VV TM I Sbjct: 293 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDI 352 Query: 350 KESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAA 409 S+ KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAA Sbjct: 353 NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 412 Query: 410 KEIKQLISDSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAASQEQSAGIAEVN 469 KEIK LI DSVDKVD G KLV EAG TM E+V SVK+V DIM EI AASQEQSAGI +VN Sbjct: 413 KEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVN 472 Query: 470 HAITQIDEITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKL----------KTVLQVP 519 AI Q+D++TQQNAALVE+AAAAA SL EQA LA+AV+VFKL KTV ++ Sbjct: 473 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPATKTVRKIA 532 Query: 520 TVPVPL----RSVNAPPAVTAAAKPARLARDEEFEEF 552 R++ AP V+ P +E+EEF Sbjct: 533 AAASHHAPAKRAIAAPTPVS----PKAATGGDEWEEF 565 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 252/524 (48%), Positives = 338/524 (64%), Gaps = 29/524 (5%) Query: 4 HLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAALNM---REA 60 ++KIG+RL GF LIL L A+ G+ R+ + ++ +L++ ++ +A N Sbjct: 5 NMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGTSV 64 Query: 61 GSALALALRKVVTPTDAAEGKTEDAHLGKILQAYAGYEKQLTDLSPGGRGKELLLATSGE 120 ++ LAL K P E + +A KQ+T++ + S + Sbjct: 65 NASRTLALVKASDP--------ESQEFFQ--KAITAQSKQITEIQKSIEDR----INSDK 110 Query: 121 GKKLFPLVGQ-------IRQQV----GSNNYFDAAQQLKSDFLPAHEKWMSSVAALASFQ 169 K+LF V + IR+ + N +A Q + + +PA + ++ SV + Sbjct: 111 EKELFAEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHY 170 Query: 170 QEDMQQAHAQARDSYRKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLKRAGQIAETISR 229 + +++ A D Y ++ ++ V+ + LG + +T I PL A ++AE+++ Sbjct: 171 ENEVKLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAE 230 Query: 230 GDLTQHAQ-AQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHEIARGNVDLSN 288 GDLT + A+ DE L++ L MQANL T+ +++ IA AS EIA GN+DLS+ Sbjct: 231 GDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSS 290 Query: 289 RTESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRVVGDVVTTMGS 348 RTE QASSLEETASSME+LTSTV+QNA N++QANQL ++AS A KGG VV VV TMG+ Sbjct: 291 RTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGA 350 Query: 349 IKESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAA 408 I S+ KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAA Sbjct: 351 INNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAA 410 Query: 409 AKEIKQLISDSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAASQEQSAGIAEV 468 AKEIK LI DSV+KVD G KLV EAG TM EIV VK+VADIM EITAASQEQS GI +V Sbjct: 411 AKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQV 470 Query: 469 NHAITQIDEITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKL 512 N A++Q+D++TQQNAALVE+AAAAA SLQ+QA LA+AV+VF++ Sbjct: 471 NQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust. Identities = 223/354 (62%), Positives = 265/354 (74%), Gaps = 6/354 (1%) Query: 162 VAALASFQQEDMQQAHAQARDSY---RKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLK 218 VAAL + + ++A +++ + R IG + GVL L F F + R I PL Sbjct: 162 VAALIDLELREAKKAFEESQTRFVMVRNISIGAIIFGVL---LAGFMAFWLIRLIARPLH 218 Query: 219 RAGQIAETISRGDLTQHAQAQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHE 278 A QIA +++ GDLTQ +E L+ L M +L+ T++ V++ I VAS E Sbjct: 219 DAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGE 278 Query: 279 IARGNVDLSNRTESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRV 338 IA GN DLS+RTE+QA SLEETASSME+LTSTV+QNA NA+QANQLV+SA++ A KGG V Sbjct: 279 IASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSV 338 Query: 339 VGDVVTTMGSIKESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 398 V +VV TMGSIK+SS KIVDIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEV Sbjct: 339 VSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 398 Query: 399 RALAQRSAAAAKEIKQLISDSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAAS 458 R LAQRSA AAKEIK LI DSV KVD G KLVD+AG+TM EIV SVK VADIM EIT+AS Sbjct: 399 RNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSAS 458 Query: 459 QEQSAGIAEVNHAITQIDEITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKL 512 QEQS GI +VN AI+Q+DE+TQQNAALVEQAAAAA S+Q+QA L+ AVA+FKL Sbjct: 459 QEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKL 512 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 353 bits (906), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 217/361 (60%), Positives = 261/361 (72%), Gaps = 3/361 (0%) Query: 194 MGVLTLGL--GCFFTFVITRSIVTPLKRAGQIAETISRGDLTQHAQAQGHDEAAHLVNTL 251 +GVL LGL + F + R+I PLK +TI+ GDLT + + + +E L+ L Sbjct: 195 VGVL-LGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGL 253 Query: 252 DAMQANLAATLNEVKQSAAVIAVASHEIARGNVDLSNRTESQASSLEETASSMEQLTSTV 311 MQ L T+ +V++ + I+ A+ EIA GN+DLS+RTE QA+SLEETASSME+LTSTV Sbjct: 254 QKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTV 313 Query: 312 QQNAANAQQANQLVLSASDHATKGGRVVGDVVTTMGSIKESSGKIVDIIGVIDGIAFQTN 371 +QN NA+QANQL SAS A KGG VV DVV TM +I S+ KIVDIIGVIDGIAFQTN Sbjct: 314 KQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTN 373 Query: 372 ILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLISDSVDKVDTGGKLVD 431 ILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI DSV+KVD G +LV Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVA 433 Query: 432 EAGATMSEIVASVKQVADIMGEITAASQEQSAGIAEVNHAITQIDEITQQNAALVEQAAA 491 EAG TM+E+V SVK+V DIM EI AASQEQSAGI +VN AI Q+DE+TQQNAALVEQAAA Sbjct: 434 EAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAA 493 Query: 492 AAVSLQEQADVLAQAVAVFKLKTVLQVPTVPVPLRSVNAPPAVTAAAKPARLARDEEFEE 551 AA SL++QA L+ V+VFKL+ P VP A + AA D ++E+ Sbjct: 494 AASSLRDQATNLSTVVSVFKLQGHQSAPQNLVPQARPKALESRPAAIAHTGKGNDGDWEQ 553 Query: 552 F 552 F Sbjct: 554 F 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 699,143 Number of extensions: 24188 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 15 Length of query: 552 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 466 Effective length of database: 716,977 Effective search space: 334111282 Effective search space used: 334111282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)