BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1057.p (674 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 357 1e-99 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 340 1e-94 gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemo... 338 5e-94 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 337 1e-93 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 333 2e-92 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 357 bits (916), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 211/328 (64%), Positives = 256/328 (78%), Gaps = 4/328 (1%) Query: 316 RQQLSVLGAV-LLLAALVAWLGVMITRSVSVPVQASVAMAGRVANYDLTARATVQGRDES 374 R L VLG V L L ++AW M+TRS++ P+ +V++A VA+ DLT R TV +DE+ Sbjct: 187 RMLLIVLGLVALTLGIVLAW---MLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDET 243 Query: 375 AQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAM 434 QLL +L DM SL + +VR+ ++ I AS +IA+GN DLS RTE QASSLEETAS+M Sbjct: 244 GQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSM 303 Query: 435 EQLTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVID 494 E+LTSTV+ NA +ARQA+QLA +AS +AE+GG VV VVDTM I S+R+IVDII VID Sbjct: 304 EELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVID 363 Query: 495 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVE 554 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI DSV++V+ Sbjct: 364 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVD 423 Query: 555 TGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAA 614 TG +LV EAG TM E+V SV++V IM+EI AS+EQS GI QVN AI QM+ +TQQNAA Sbjct: 424 TGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAA 483 Query: 615 LVEEAAAAAESLQQQAELLWDAVSVFRI 642 LVEEAAAAAESL +QA L AVS+F++ Sbjct: 484 LVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 340 bits (873), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 203/311 (65%), Positives = 238/311 (76%) Query: 340 TRSVSVPVQASVAMAGRVANYDLTARATVQGRDESAQLLGSLNDMTHSLGGIVGRVRTSI 399 +RS++ P++ +V +A VA DL R V DE+ QLL +L DM L V VRT I Sbjct: 213 SRSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGI 272 Query: 400 EVIQHASREIATGNADLSRRTESQASSLEETASAMEQLTSTVQNNAHSARQADQLASSAS 459 E I AS +IA GN DLS RTE QASSLEETAS+ME+LTSTV+ NA +ARQA+QLA SAS Sbjct: 273 ETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSAS 332 Query: 460 QLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 519 +AE+GG VV VVDTM I S+++IVDII VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 333 GVAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 392 Query: 520 GFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVETGGQLVDEAGATMHEIVGSVRQVAG 579 GFAVVASEVR+LAQRSA AAKEIK LI DSV++V+ G +LV EAG TM E+V SV++V Sbjct: 393 GFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTD 452 Query: 580 IMSEITQASEEQSNGISQVNDAIAQMEGITQQNAALVEEAAAAAESLQQQAELLWDAVSV 639 IMSEI AS+EQS GI QVN AI QM+ +TQQNAALVEEAAAAAESL +QA L +AVSV Sbjct: 453 IMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSV 512 Query: 640 FRIQEDAAHQP 650 F++ AA P Sbjct: 513 FKLDGVAASTP 523 >gi|134093834|ref|YP_001098909.1| putative methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 700 Score = 338 bits (867), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 258/664 (38%), Positives = 369/664 (55%), Gaps = 33/664 (4%) Query: 3 RLLANLKLWQKFALLGVLGLILFGVPTALYYGSTSHTIKLKQDEIAGVEPVRRLLRSVQL 62 +L+ L+L KF +L ++ + + T L G +I + E G++ VR++ ++L Sbjct: 16 KLMQGLRLLPKFIVLTLIFMTPLVLATLLLLGELDKSIAFTKQERLGIQHVRKVQEIIRL 75 Query: 63 MQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALQA-LGEGLA---PMGRDDP--QALGSF 116 QQHR + + G A A + Q LQ + E +A M +++P A ++ Sbjct: 76 TQQHRSYQHMFIMG--------NASAEQQAQGLQKNINEQIALFDAMRKEEPALYAGDAW 127 Query: 117 NKLVETWNKVRDAVAAKAITPPESFAAHSAAIAALFDLNERMLDYYHYTVDPDFDSTQLI 176 + + W +++ +A + +++ + IA L N + D + T DP+ S L Sbjct: 128 TAIQKNWTALQEKLAT--VKDRKTYNEQTELIAQLARFNTMIADRTNLTHDPETASYYLA 185 Query: 177 NAAFISMPALTEDLGRARARGASLLLKKELKMEDRLELVAMLERAQERLNAAKKSFSKGV 236 P +TE L RGA+ + ++ + + L + + Q L+ + Sbjct: 186 ELFIGDFPQITEGLSEVAGRGAAYIDSGLMEANEEVLLGSTVLLTQRDLSGIPGKIETLL 245 Query: 237 AANPHLGTQLGSTFQQA-------DRMGNEVIQLTREKILLPQEMSFSPDDYFKRFTAAI 289 +P L Q+ S DR NEV+ + S + + + AAI Sbjct: 246 HHSPALKPQMTSVLAAVPLAVGYLDRAKNEVLSSVDQT---------SGNQFAEAGNAAI 296 Query: 290 DEQFKATRAVTEALAAQLDAQNADLRRQQLSVLGAVLLLAALVAWLGVMITRSVSVPVQA 349 D + A L L A+ + ++ A+ L A+ A+ + S S V+ Sbjct: 297 DGLYAAAATSANLLDQLLLARMESDAFHRSMIMLAICLTMAIAAYFLLGFYVSFSTEVRR 356 Query: 350 SVAMAGRVANYDLTARATVQGRDESAQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREI 409 A R A+ DL+ + T G+DE AQLL + +M+ L +V +VR + I AS EI Sbjct: 357 LGAAVMRTASGDLSRKITSGGKDEIAQLLNAFGNMSDGLTRLVTQVRLGSDTIAQASNEI 416 Query: 410 ATGNADLSRRTESQASSLEETASAMEQLTSTVQNNAHSARQADQLASSASQLAERGGQVV 469 ATGN +LS RTE QASSLE+T++AME+LTSTV+ NA A+QA++LA +AS +AE+GG V Sbjct: 417 ATGNLNLSTRTEEQASSLEQTSAAMEELTSTVKQNAAHAQQANRLAKTASGIAEQGGSAV 476 Query: 470 GNVVDTMAQIRDSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 529 VVDTM I+ SSR I DII V+D IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR Sbjct: 477 SQVVDTMQAIQQSSREISDIIGVVDSIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVR 536 Query: 530 SLAQRSAGAAKEIKQLISDSVERVETGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASE 589 +LAQRSA AAKEIK LI+ SVE+VE G + V+ AG TM +IV S+ V IM+EIT AS Sbjct: 537 NLAQRSAVAAKEIKVLIAASVEKVEAGSKQVNAAGKTMDQIVQSITHVTTIMAEITAASA 596 Query: 590 EQSNGISQVNDAIAQMEGITQQNAALVEEAAAAAESLQQQAELLWDAVSVFRIQEDAAHQ 649 EQ +GI +N A+ QM+GITQQNAALVEEAAAAAES+ +Q L V+VF++ D H Sbjct: 597 EQQSGIEHINQALGQMDGITQQNAALVEEAAAAAESMHEQTLALSATVAVFKLAND-EHG 655 Query: 650 PRQP 653 P +P Sbjct: 656 PEKP 659 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 337 bits (864), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 212/352 (60%), Positives = 263/352 (74%), Gaps = 14/352 (3%) Query: 321 VLGAVL--LLAALVAW-LGVMITRSVSVPVQASVAMAGRVANYDLTARATV-QGRDESAQ 376 ++GAV+ LL L+AW L V ITR P+ ++ +A VA DLTAR+ + + +DE Sbjct: 193 IIGAVIAILLGTLIAWRLTVGITR----PLHEALKVAESVAEGDLTARSDMAETQDEPGL 248 Query: 377 LLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAMEQ 436 LL +L M +L V ++R + I AS EIA+GN DLS RTE QASSLEETAS+ME+ Sbjct: 249 LLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEE 308 Query: 437 LTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVIDGI 496 LTSTV+ NA ++RQA+QLA +AS +A +GG VV VVDTM I +S+++IVDII VIDGI Sbjct: 309 LTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGI 368 Query: 497 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVETG 556 AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKEIK LI DSVE+V+ G Sbjct: 369 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAG 428 Query: 557 GQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAALV 616 +LV EAG TM EIV V++VA IM+EIT AS+EQS+GI QVN A++QM+ +TQQNAALV Sbjct: 429 SKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALV 488 Query: 617 EEAAAAAESLQQQAELLWDAVSVFRI------QEDAAHQPRQPQAVSQPHAA 662 EEAAAAAESLQ QA L +AVSVFR+ + AA + Q A+ +P AA Sbjct: 489 EEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTAMHKPLAA 540 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 333 bits (853), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 199/321 (61%), Positives = 246/321 (76%) Query: 322 LGAVLLLAALVAWLGVMITRSVSVPVQASVAMAGRVANYDLTARATVQGRDESAQLLGSL 381 +GA++ L ++ + R ++ P+ +V +A VA DLT + V +E+ QLL +L Sbjct: 192 IGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQAL 251 Query: 382 NDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAMEQLTSTV 441 DM SL V VR E I AS EIA+GNADLS RTE+QA SLEETAS+ME+LTSTV Sbjct: 252 KDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTV 311 Query: 442 QNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVIDGIAFQTN 501 + NA +ARQA+QL SA+++A +GG VV VV TM I+DSSR+IVDII VID IAFQTN Sbjct: 312 RQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTN 371 Query: 502 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVETGGQLVD 561 ILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAGAAKEIK LI DSV +V+ G +LVD Sbjct: 372 ILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVD 431 Query: 562 EAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAALVEEAAA 621 +AG+TM EIV SV+ VA IMSEIT AS+EQS+GI QVN AI+QM+ +TQQNAALVE+AAA Sbjct: 432 QAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAA 491 Query: 622 AAESLQQQAELLWDAVSVFRI 642 AA+S+Q QA L AV++F++ Sbjct: 492 AAQSMQDQAVELSGAVAIFKL 512 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 888,454 Number of extensions: 29331 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 15 Length of query: 674 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 586 Effective length of database: 710,387 Effective search space: 416286782 Effective search space used: 416286782 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)