BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1053.p (260 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 155 2e-39 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 96 2e-21 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 90 9e-20 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 84 9e-18 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 80 2e-16 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 155 bits (392), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 144/260 (55%), Gaps = 3/260 (1%) Query: 3 LKDKVALITGSASGIGKEIAVEYAKQGAKVVIADL--ALEAAKATAEEIVKNGGTAMAVA 60 L+ K ALITGS SGIG IA A+QGA +V+ A E A A G + Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYHP 65 Query: 61 MNVTDETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLT 120 +++ ++ + A +G +DI+++NAGIQ ++ + + +E W ++AI+L AF T Sbjct: 66 ADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSAFHT 125 Query: 121 TRAAMKAMIKQGRGGSIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRT 180 TR A+ AM K+ G II + S H + S K+ YV AKHG++GL+K A E A+ + Sbjct: 126 TRLALPAM-KEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTGVTC 184 Query: 181 NVICPGFVRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAA 240 N ICPG+V TPLV+KQ+ +A +S +D K ++ + GEF T + + AVFL + Sbjct: 185 NAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGALAVFLCS 244 Query: 241 FPTNALTGQSVVVSHGWHMQ 260 N + G + + GW Q Sbjct: 245 EAANQVRGAAWSMDGGWTAQ 264 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 95.5 bits (236), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 16/258 (6%) Query: 3 LKDKVALITGSASGIGKEIAVEYAKQGAKVVIADLALEAAKATAEEIVKNGGTAMAVAMN 62 L +VAL+TG++ GIG+ IA AKQG KV+ + A A +E + ++G V ++ Sbjct: 6 LAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESG---KGVVLD 62 Query: 63 VTDETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLTTR 122 V D + + + +G + I+++NAGI + E W ++A +L +R Sbjct: 63 VNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSR 122 Query: 123 AAMKAMIKQGRGGSIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRTNV 182 A ++ M+K + G II + SV + + Y AK G+ G+++ +A+E +I N Sbjct: 123 AVLRGMMK-AKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 183 ICPGFVRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAAFP 242 + PGF+ T + + +SE+ + +L+ G +D+A FLA+ Sbjct: 182 VAPGFIDTDMTKT----------LSEQQI--SALLQQVPLGRLGVPEDIAAAVSFLASPQ 229 Query: 243 TNALTGQSVVVSHGWHMQ 260 + +TG ++ V+ G +M Sbjct: 230 ASYITGTTLHVNGGMYMN 247 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 90.1 bits (222), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 19/255 (7%) Query: 6 KVALITGSASGIGKEIAVEYAKQGAKVVIADLALEAAKATAEEIVKNGGTAMAV-AMNVT 64 K AL++G G+G IA+ G V + TA E KN T++ V +V+ Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVT---YHHNADTAAEFRKN--TSIPVFCWDVS 57 Query: 65 DETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLTTRAA 124 D Q +G+ G +DI+++NAGI + + ++ W +++ +L F +R Sbjct: 58 DYAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNV 117 Query: 125 MKAMIKQGRGGSIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRTNVIC 184 ++ M ++ G II + SV+ +A Y AK G+ G K++A E A+ +I N I Sbjct: 118 IEGM-RERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIA 176 Query: 185 PGFVRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAAFPTN 244 PG+ T +V IP++ V++KI+ V G T D+A+ VFLA + Sbjct: 177 PGYCDTDMVSA-IPQE----------VLEKIVTGIPV-GHLGTGSDIARLVVFLADNASG 224 Query: 245 ALTGQSVVVSHGWHM 259 +TG + V+ G M Sbjct: 225 FITGATFDVNGGQFM 239 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 83.6 bits (205), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 19/258 (7%) Query: 6 KVALITGSASGIGKEIAVEYAKQGAKVVIADLALEAAKATAEEIVK----NGGTAMAVAM 61 ++AL+TG G+G+ I ++ A G +VV + TA E + +G A Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTT---YSPSNTTAGEWLATMKASGYDFRAYPC 59 Query: 62 NVTDETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLTT 121 +V+D + VA G +D++++NAGI ++ +W ++ +LD F T Sbjct: 60 DVSDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMT 119 Query: 122 RAAMKAMIKQGRGGSIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRTN 181 + M+++G G II + SV++ + + Y AK G+ G K +A E A+ + N Sbjct: 120 KPVCDGMVERGW-GRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVN 178 Query: 182 VICPGFVRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAAF 241 I PG++ T +V IP +DV+ ++ G ++VA +LA+ Sbjct: 179 TISPGYIGTKMV-TAIP----------QDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASD 227 Query: 242 PTNALTGQSVVVSHGWHM 259 +TG ++ ++ G HM Sbjct: 228 EAAFVTGANIAINGGQHM 245 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 6/180 (3%) Query: 29 GAKVVIADLALEAAKATAEEIVKNGGTAMAVAMNVTDETQVDKGVADAVNTYGGLDIMIS 88 GA+VV+A ++ K EI GG A V ++VTD + +A A G +DI+++ Sbjct: 3 GAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILVN 62 Query: 89 NAGIQIISPVAELSLENWRKMLAIHLDGAFLTTRAAMKAMIKQGRGGS-----IIYMGSV 143 NAG+ + +++ E + ++ + GAF + K MI + +G + II + SV Sbjct: 63 NAGVAARGRLLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIASV 122 Query: 144 HSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRTNVICPGFVRTPLVEKQI-PEQAK 202 P Y +K L+ + KT+A E K I N ICPG++ T L ++ EQ K Sbjct: 123 AGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQEYFKSEQGK 182 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.131 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 436,817 Number of extensions: 15979 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 12 Length of query: 260 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 180 Effective length of database: 736,747 Effective search space: 132614460 Effective search space used: 132614460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)