BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1047.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095768|ref|YP_001100843.1| putative molybdenum cofactor bi...   375   e-105
gi|134096134|ref|YP_001101209.1| thiazole biosynthesis protein [...    70   1e-13

>gi|134095768|ref|YP_001100843.1| putative molybdenum cofactor
           biosynthesis protein MoeB [Herminiimonas arsenicoxydans]
          Length = 289

 Score =  375 bits (964), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/268 (74%), Positives = 230/268 (85%), Gaps = 14/268 (5%)

Query: 9   DIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHLTLIDLDNL 68
           +ID+ERRFGG+ARLYG AAL RFR A VCVVGVGGVGSW+VEALARSAIG +T+IDLDNL
Sbjct: 14  EIDFERRFGGIARLYGPAALTRFRAAHVCVVGVGGVGSWVVEALARSAIGKITMIDLDNL 73

Query: 69  AESNVNRQIHALTGTLGQAKVTALHERISQINPTCVVTEVEDFVDPENVEQMLGGGRFDY 128
           AESNVNRQIHALT TLG+AKVTAL ERI QINP CVVTE+EDF+  +N+++M+G   +DY
Sbjct: 74  AESNVNRQIHALTDTLGKAKVTALAERIDQINPYCVVTEIEDFLSADNLDEMIGAHHYDY 133

Query: 129 VIDAIDNVPAKVAMIAWCRKNGMPMVTIGSAGGQIDPTQIEIRDLCRTEQEPLLAKVRKR 188
           +IDAIDNV AK A+IA+CRK+G+ +VTIGSAGGQIDPT+I + DLCRTEQEPLLAKVRKR
Sbjct: 134 IIDAIDNVRAKTALIAYCRKHGLKLVTIGSAGGQIDPTKIAVLDLCRTEQEPLLAKVRKR 193

Query: 189 LRSQHGFPRGTKNKFHIDAVFSTEPLRFPELAEGEACEVVPAEDMDVGADAADSTQAGVT 248
           LR++HGFPRGTKNKF IDAVFSTEPLRFPE    EAC++    D D        T AG+T
Sbjct: 194 LRAEHGFPRGTKNKFGIDAVFSTEPLRFPE--SEEACDI----DSD--------TPAGIT 239

Query: 249 GLNCAGFGSAMVVTATFGLVAAAHVLKK 276
           GLNCAGFGSAMVVTA+FGLVAAAHVL+K
Sbjct: 240 GLNCAGFGSAMVVTASFGLVAAAHVLRK 267


>gi|134096134|ref|YP_001101209.1| thiazole biosynthesis protein
           [Herminiimonas arsenicoxydans]
          Length = 263

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 15/154 (9%)

Query: 2   STSIDLNDIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHLT 61
           S  I L++ID E    G  +L  A AL         ++G GG+GS     LA + IG +T
Sbjct: 23  SRHILLDEIDIE----GQEKLLAAHAL---------IIGAGGLGSPAAFYLASAGIGTIT 69

Query: 62  LIDLDNLAESNVNRQIHALTGTLGQAKVTALHERISQINPTCVVTEVEDFVDPENVEQML 121
           L+D D +  +N+ RQI   T  +GQAKV +  + +++INPT  +  +++ V  E +++++
Sbjct: 70  LVDDDTVDLTNLQRQILHTTERVGQAKVVSGQKTLAEINPTIEIIALQERVSGERLDELV 129

Query: 122 GGGRFDYVIDAIDNVPAKVAMIAWCRKNGMPMVT 155
                  V+D  DN   + A+   C  N +P+V+
Sbjct: 130 RNA--SVVLDCCDNFATRHAINRACVANRVPLVS 161


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 490,018
Number of extensions: 18943
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)