BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1046.p
         (314 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093587|ref|YP_001098662.1| preprotein translocase subunit ...   482   e-138
gi|134093586|ref|YP_001098661.1| putative preprotein translocase...    63   2e-11

>gi|134093587|ref|YP_001098662.1| preprotein translocase subunit
           SecF [Herminiimonas arsenicoxydans]
          Length = 302

 Score =  482 bits (1241), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/302 (76%), Positives = 262/302 (86%)

Query: 13  MRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPADLEKIRKSIEGLG 72
           MRHALIFN IS LTFVAAVFFL  KGLH SIEFTGGTVME+ Y KPA++E +R  +  LG
Sbjct: 1   MRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPANIEGVRTKLGELG 60

Query: 73  YRDTLVQSFGTAQDVMIRLPAQAGVNASQQSEKVNAALKADDPDVRLQRVEFVGPQVGDE 132
           Y D  VQSFGTAQDV+IRLP Q  VN +Q SE+V  ALKA D  V L+RVEFVGPQVG+E
Sbjct: 61  YTDMQVQSFGTAQDVLIRLPVQQNVNTAQVSERVMTALKAQDETVSLKRVEFVGPQVGEE 120

Query: 133 LAHDGLLALAMVVVGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFAFFQWEFSLTVLA 192
           L HDGL+A+ M+V+G++IYLA RFEWK+AVAA+ ANLHDVVIILGFFAFFQWEFSLTVLA
Sbjct: 121 LTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILGFFAFFQWEFSLTVLA 180

Query: 193 AILAVLGYSVNESVVVFDRVREAFRDRRFGKLSAPEVLNHAITSTMSRTIITHGSTEMMV 252
            ILAVLGYSVNESV+VFDRVRE FRDR+ GK++  +V+NHAIT T+SRT+ITHGST++MV
Sbjct: 181 GILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGTISRTLITHGSTQLMV 240

Query: 253 LAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLIKPVKVKDENGGA 312
           L+MFF GGPTLHYFALALTIGI FGIYSSVFVAAALAMWLGVKREDLIKP+K KDE+ GA
Sbjct: 241 LSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDLIKPIKEKDEHDGA 300

Query: 313 VV 314
           VV
Sbjct: 301 VV 302


>gi|134093586|ref|YP_001098661.1| putative preprotein translocase
           subunit SecD [Herminiimonas arsenicoxydans]
          Length = 619

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 26/214 (12%)

Query: 96  GVNASQQSEKVNAALKADDPDVRLQRVE--FVGPQVGDELAHDGLLALAMVVVGIVI--- 150
           G+ +S+ +  +   L+A      ++ +E   +GPQ+G E    G  A     +GI I   
Sbjct: 406 GMGSSEAASDLALLLRAGSLAAPMEIIEERTIGPQLGAENIKKGFDATLYGFIGIAIFMI 465

Query: 151 --YLAFRFEWKFAVAAVIANLHDVVIILGFFAFFQWEFSLTVLAAILAVLGYSVNESVVV 208
             Y AF F   FA+A       +V++++   +  Q   +L  +AAI   LG +++ +V++
Sbjct: 466 IYYRAFGFFSVFALAV------NVMLLIALLSMLQATLTLPGIAAIALTLGMAIDANVLI 519

Query: 209 FDRVREAFRDRRFGKLSAPEVLNHAITSTMSR---TIITHGSTEMMV-LAMFFFGGPTLH 264
            +R+RE  R        A      AI     R   TI+    T ++  LA+  FG   + 
Sbjct: 520 NERIREELR--------AGHSPQTAIAMGFERAWATILDSNVTTLIAGLALLIFGSGAVR 571

Query: 265 YFALALTIGILFGIYSSVFVA-AALAMWLGVKRE 297
            FA+   +GIL  I+S+VFV+   + +W G K++
Sbjct: 572 GFAVVHCLGILTSIFSAVFVSRGVVNLWYGRKKK 605


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 563,158
Number of extensions: 21975
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 232
Effective length of database: 730,157
Effective search space: 169396424
Effective search space used: 169396424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)