BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1045.p
         (634 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093586|ref|YP_001098661.1| putative preprotein translocase...  1007   0.0  

>gi|134093586|ref|YP_001098661.1| putative preprotein translocase
           subunit SecD [Herminiimonas arsenicoxydans]
          Length = 619

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/617 (77%), Positives = 556/617 (90%), Gaps = 1/617 (0%)

Query: 1   MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSGKSTLKVEPALAGRVDQILKQG 60
           MNRY LWKY  IV+ALL G +YT+PNFFGESPAVQISS K+T+KV+ +L  +V+Q+L++ 
Sbjct: 1   MNRYPLWKYITIVIALLLGALYTIPNFFGESPAVQISSAKATVKVDSSLMTQVEQVLQKA 60

Query: 61  NLGAESVAFDNSGAAPSVRARFASTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120
            L ++ + ++  G   +VR RF +TD+QFKAK LLE  LN DP+DPTY+VAFNLLPNTP 
Sbjct: 61  GLQSDGMVYETIGTQGTVRVRFPNTDVQFKAKGLLEANLNLDPADPTYLVAFNLLPNTPA 120

Query: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGLQSSVRSLLRDKNIRQSGINRV 180
           WLQSLHA PMYLGLDLRGGVHFLMQVD KAV+NKR+ GLQ+S R++LRDKN+R +GI R 
Sbjct: 121 WLQSLHAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARAILRDKNVRHAGIARN 180

Query: 181 GDSIEISFRDADTRNKARAALG-ELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQ 239
           GD+IEI FRDA+TR+KAR ALG EL+E+LLTDAGSGD+LKL+  L+P ALKQT ED V+Q
Sbjct: 181 GDNIEILFRDAETRSKARTALGDELRELLLTDAGSGDELKLVGALQPAALKQTVEDAVQQ 240

Query: 240 NISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDDSVV 299
           NI+TLSKRVNELGVAEPLIQRQGADRIVV+LPGVQDVSRAKDIIG+TATLEVR+VD++V 
Sbjct: 241 NITTLSKRVNELGVAEPLIQRQGADRIVVQLPGVQDVSRAKDIIGKTATLEVRLVDETVT 300

Query: 300 RGTEETSAIPFGSELFKVGKGAPVVLVKEPVLTGDYISNASASFDENHQPAVSIDLNGDG 359
           RGTE+T+ IPFGSELFKVGK APVVL K+P++TG+YIS+ASASFD+N QP+VSIDLNGDG
Sbjct: 301 RGTEDTATIPFGSELFKVGKNAPVVLYKDPIITGEYISSASASFDQNQQPSVSIDLNGDG 360

Query: 360 GRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSELGSRFQITGMGSPEAASDLALLL 419
           GR+MREATR +VGKAMAIVLFEK KGEVLTVATIR ELG+RFQITGMGS EAASDLALLL
Sbjct: 361 GRRMREATRTRVGKAMAIVLFEKNKGEVLTVATIRDELGARFQITGMGSSEAASDLALLL 420

Query: 420 RAGSLAAPMEIIEERTIGPQLGADNIKKGFDSVLYGFVAMAIFMVIYYQLFGFFSALALS 479
           RAGSLAAPMEIIEERTIGPQLGA+NIKKGFD+ LYGF+ +AIFM+IYY+ FGFFS  AL+
Sbjct: 421 RAGSLAAPMEIIEERTIGPQLGAENIKKGFDATLYGFIGIAIFMIIYYRAFGFFSVFALA 480

Query: 480 VNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQAAIAAG 539
           VNV+LL+ALLS LQ TLTLPGIAAIAL LGMAID+NVLINERIREELRAG+SPQ AIA G
Sbjct: 481 VNVMLLIALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRAGHSPQTAIAMG 540

Query: 540 FDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWY 599
           F+RAWATILDSNVTTLIAGLALLIFGSGA+RGFAVVHCLGILTS+FSAVF SRGVVNLWY
Sbjct: 541 FERAWATILDSNVTTLIAGLALLIFGSGAVRGFAVVHCLGILTSIFSAVFVSRGVVNLWY 600

Query: 600 GRKKRLSSLAIGQIWKP 616
           GRKK+L+S++IGQ+WKP
Sbjct: 601 GRKKKLTSISIGQVWKP 617


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,059,010
Number of extensions: 41622
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 547
Effective length of database: 713,682
Effective search space: 390384054
Effective search space used: 390384054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)