BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1043.p
         (401 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094128|ref|YP_001099203.1| putative chromate transporter [...    89   4e-19

>gi|134094128|ref|YP_001099203.1| putative chromate transporter
           [Herminiimonas arsenicoxydans]
          Length = 456

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 158/370 (42%), Gaps = 45/370 (12%)

Query: 22  LRLGLTSFGGPAAHLGYFRQEFVARRHWLSEQTYADLVAMCQFLPGPSSSQVGLAIGLIR 81
           L+LG   FGGPAA +    +E V +R W+SE+ +   +  C  LPGP + Q+   +G + 
Sbjct: 31  LKLGFLGFGGPAAQIALMHRELVEQRRWISERRFLHALNYCMLLPGPEAQQLATYMGWLM 90

Query: 82  GGYRGALAAWLGFTLPSAVLLMVVALSVLSDARW---LSGEVVHGLKIVAVAIVAQAVWG 138
              RG +AA   F LPS  L  ++ALS L  A     L   + +G+K    A+V  AV  
Sbjct: 91  HRTRGGIAAGALFVLPS--LFFLIALSWLYIAYGHVPLIAGLFYGIKPAITAVVVHAVHR 148

Query: 139 MAQTLCRGPQRLLIMILAALATGLLHGSLVQLGVIV-LAGLAG----RLLLH------GP 187
           +     R  +  L+  +AA +   +    V   VIV  AGL G    R + H        
Sbjct: 149 IG---SRALKNNLMWAIAAASFVAIFAMNVPFPVIVATAGLIGYLGARYIPHKFTVGGSH 205

Query: 188 QMTLQEQLPLVVS-----------RRAGRACLLLFFVLLAGIPLLASLYPAPW---LQQV 233
             T +   P +V            R +G   +L    +L  +P+        W   L Q+
Sbjct: 206 GQTDKSYGPALVDDDTPAPDHAQFRWSGLTKILAAGGVLWCVPMAVLTLRFGWDHTLTQM 265

Query: 234 NIFY-RVGSLVFGGGHVVLP-LLQAELVPTGWVDKDVFLAGYGAAQAVPGPLFTLAAYLG 291
             F+ +   L FGG + VLP + Q  +    W+     + G    +A PGPL  + A++G
Sbjct: 266 GWFFTKAALLTFGGAYAVLPYIYQGAIGHYNWLTPSQMIDGLALGEANPGPLIMVVAFVG 325

Query: 292 VVMS----------SWPNGVTGGVLCLLAIFAPSFLLVTGLLPFWDEVRRQRAMQAALAG 341
            V +           +  G T  VL     F PSF+ +    P  +         A L G
Sbjct: 326 FVGAYVQAVFGPDLQFLAGATAAVLVTWFTFLPSFIFILAGGPLVESTHGNLKFTAPLTG 385

Query: 342 VNAAVVGLLL 351
           + AAVVG++L
Sbjct: 386 ITAAVVGVIL 395


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 644,432
Number of extensions: 24671
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 317
Effective length of database: 723,567
Effective search space: 229370739
Effective search space used: 229370739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)