BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1042.p (723 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094133|ref|YP_001099208.1| putative response regulator rec... 235 5e-63 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 131 1e-31 gi|134094127|ref|YP_001099202.1| putative two-component system s... 113 3e-26 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 93 4e-20 gi|134094163|ref|YP_001099238.1| putative two-component histidin... 91 2e-19 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 235 bits (600), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 189/307 (61%), Gaps = 10/307 (3%) Query: 60 LVLLRLLRDNQRS----ARHLVLAKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAGLL 115 + L L RD +R L LAK A+ A + FL+ MSHEIRTPMN +LGM L Sbjct: 155 VALENLSRDLERQVLERTHDLSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQLA 214 Query: 116 RSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASTEA 175 + D +Q E+ + + SA ALL I+ND+LDFSK++ G ++ V FDL + V++ E Sbjct: 215 LAQASDVEQREYLETAQYSAEALLTILNDILDFSKLESGHLEFEAVTFDLPKAVDSVIEL 274 Query: 176 LSFKAHEKQVRLLAHVDSRLPERLLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHV 235 +S + + L A D+ LP L GD GR+RQ+LLNL+GNALKFT G V L+++ L Sbjct: 275 MSARMQGAALSLNAECDADLPRLLTGDVGRLRQVLLNLIGNALKFTEQGSVTLKIERLPA 334 Query: 236 AGDHCRVRFEVRDSGIGMDEDTLRRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGG 295 +G +RF V DSGIG+ + RLF F+QAD+S++R++GGTGLGLSICK++VE+ G Sbjct: 335 SGTQIPLRFTVIDSGIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRG 394 Query: 296 KIGVDSSPGAGSCFWFELG-IPVAQPPR-----FASHIDAAKKRQVALLETHDASAAMLH 349 IGV+S+PG GS FWFEL +P +P A + A++ + L E ++ + ++ Sbjct: 395 CIGVESTPGEGSRFWFELTFVPAPEPGEKSDIIVAPALPASRTLHILLAEDNEINQKVVV 454 Query: 350 EYLRGAG 356 L+ +G Sbjct: 455 ALLKKSG 461 Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 65/113 (57%) Query: 474 LLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLGQRKYALILMDCQMPILDGYET 533 +LL EDN +NQKV V L G+ V IA NG EA+ + Q + +ILMD MP +DG Sbjct: 440 ILLAEDNEINQKVVVALLKKSGHTVQIAQNGREAVLAVQQGVFDVILMDMHMPEMDGLAA 499 Query: 534 TRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPLLRSQLAAML 586 TR IR + PIVA+TA D + C++AGM+ +L KP +L +L Sbjct: 500 TRAIRGMPAPACSLPIVALTAAVTLSDIQTCMDAGMNYFLAKPFRIERLNGIL 552 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 8/258 (3%) Query: 69 NQRSARHLVLAKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAG-LLRSTRLDTQQAEF 127 +QR+ L AKEAA+ A + +++ +SHE+R+P+N++LG + LL++ L Sbjct: 105 HQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQILLKNEHLAAAPRTA 164 Query: 128 AKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASTEALSFKAHEKQVRL 187 + I S LLG+V+++LD ++I+ +M + L +E + +A K ++L Sbjct: 165 IQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDLLSMVRPQAEAKGLKL 224 Query: 188 LAHVDSRLPERLLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHVAGDHCRVRFEVR 247 L + ++ +L D R+RQI +NLL NA++FT G V LHV VRF+V Sbjct: 225 LCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTDDGSV-----TLHVECSPASVRFDVV 279 Query: 248 DSGIGMDEDTLRRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVDSSPGAGS 307 D+GIG+ +R+F PF + R G GLGL+I ++L+ LM G + + S G GS Sbjct: 280 DTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILLMNGSLNLVSMQGQGS 339 Query: 308 CFWFELGIPVAQPPRFAS 325 F L P+ + F S Sbjct: 340 TFIVRL--PLTEITAFES 355 >gi|134094127|ref|YP_001099202.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 466 Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 125/261 (47%), Gaps = 26/261 (9%) Query: 474 LLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLGQRKYALILMDCQMPILDGYET 533 +L+V+DN +N +VA L G +D A +GA+AL G++ Y LILMDCQMP +DGY+T Sbjct: 220 ILVVDDNAVNLQVAQQMLERFGCKIDTAKSGAQALLLSGEQHYDLILMDCQMPQMDGYQT 279 Query: 534 TRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPLLRSQLAAMLAHYLPA- 592 T +R + H I+ +A +R+ CL GMDD+++KP+ L ML +L A Sbjct: 280 TALLRAAENADTHAIIIGWSAGINRNERDTCLAIGMDDFISKPMRMHALNEMLMRWLHAQ 339 Query: 593 -------VQEADSEQSTAPMLDQARLQELFGQDSALTNEMLAMFIEHTTPVMQELARHCQ 645 +Q+ D ++T Q++FG D E+ +F++ + + L Sbjct: 340 PVCSVVTLQQDDELEAT---------QQMFGADFI---ELAQLFLKDSPKRLTHLQEASV 387 Query: 646 DSDPLLGEIQALGHRLAGSCLNLGIQALGQLGRQMEMAARQGD----PEQVRRLAVECAN 701 D + I H L GS ++G AL L R++E+ A+ + P +A E A Sbjct: 388 GKDAI--AIAKCAHVLCGSSASIGASALAALCRELEIRAKNEELHDAPSHFHAIACEYAR 445 Query: 702 AFATLGEHIQQRGRGSHEDSH 722 A L + D H Sbjct: 446 IDAKLHSMLNTASHAISPDKH 466 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 31/243 (12%) Query: 90 RGAFLSTMSHEIRTPMNAVLGMAGLLRSTR--LDTQQAEFAKAIEDSAHALLGIVNDVLD 147 R + LS +SH++RTP+ +++G++ L ++ L + Q E A+A+ D A + +V+++LD Sbjct: 685 RNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDEARRMSNLVSNLLD 744 Query: 148 FSKIDVGKMDIAVVEFDLLEVV----EASTEALSFKAHEKQVRL-----LAHVDSRLPER 198 ++I G++ + EVV AS A++ HE + RL L D+ L ER Sbjct: 745 MARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAH--HEIKTRLAPDLPLVRFDAVLIER 802 Query: 199 LLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHVAGDHCRVRFEVRDSGIGMDEDTL 258 +L NL+ NA K+T G + V A ++G V V D+G G+ Sbjct: 803 ----------VLCNLIENAAKYTPAGSRI--VIAAEISGRFLEV--SVYDNGPGLPAGQE 848 Query: 259 RRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVDSSPGAGSCFWFELGIPVA 318 +F FT+ + G GLGL+IC+ +VE G I SP G+ F L P+ Sbjct: 849 EAIFDKFTRGERESATP--GVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTL--PLG 904 Query: 319 QPP 321 PP Sbjct: 905 TPP 907 >gi|134094163|ref|YP_001099238.1| putative two-component histidine kinase sensor protein [Herminiimonas arsenicoxydans] Length = 463 Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 145/310 (46%), Gaps = 35/310 (11%) Query: 7 QRPRCASAVPGHGRLLLALAEAGFAVLILVALWHTNLPSWLALGLLALWAVRALVLLRLL 66 QR + A +L + VL+L A W L LW ++ R Sbjct: 180 QRAQEVEAKARSTKLWILFGNLLAIVLLLSAFW------------LILWEIKHR--RRAQ 225 Query: 67 RDNQRSARHLVLAKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLR---STRLDTQ 123 R +++A L L + + +F ++SH++R+P+ A+ G + + + RLD + Sbjct: 226 RKIEKNAAQLELTNKELE-------SFSYSVSHDLRSPLRAIDGYSRMFEEDFADRLDDE 278 Query: 124 QAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASTEALSFKAHEK 183 I S+ + +++D+L FS++ +D A V+ + L V E TE A K Sbjct: 279 GRRLLSVIRVSSKKMGQLIDDLLAFSRMGRKPVDSAKVDMNAL-VDEVWTEVC---ASSK 334 Query: 184 QVRLLAHVDSRLPERLLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHVAGDHCRVR 243 V L + LP + GD +RQ+ +NLL NA+K++ E + V+ +H V Sbjct: 335 TVLPLKKTN--LPA-VWGDQALLRQVWMNLLANAVKYSSKKEEQI-VEITAKQSEH-EVV 389 Query: 244 FEVRDSGIGMDEDTLRRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVDSSP 303 + VRD+G+G D +LF F + ++ GTG+GL+I +R++ GG+I +S P Sbjct: 390 YTVRDNGVGFDMRFYNKLFGVFQRLHTE--NEFPGTGVGLAIAQRVIVRHGGRIWAESKP 447 Query: 304 GAGSCFWFEL 313 + F F L Sbjct: 448 DEYTIFNFSL 457 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,247,917 Number of extensions: 48863 Number of successful extensions: 296 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 39 Length of query: 723 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 634 Effective length of database: 707,092 Effective search space: 448296328 Effective search space used: 448296328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)