BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1041.p (345 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [... 127 6e-31 gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [... 115 2e-27 gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [... 112 4e-26 gi|134093856|ref|YP_001098931.1| two-component system response r... 65 6e-12 gi|134094530|ref|YP_001099605.1| chemotaxis-specific methylester... 63 2e-11 >gi|134095716|ref|YP_001100791.1| hypothetical protein HEAR2548 [Herminiimonas arsenicoxydans] Length = 198 Score = 127 bits (320), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 101/176 (57%) Query: 153 SVDLLTRAAGYRDPETGEHLVRMANYTRIIASHLGLPKAEQDLLLAAAPMHDIGKMGIPD 212 +V L A RD T H R+ + + G+P + +L AA HDIGK+G+PD Sbjct: 19 AVGALHAALDERDEYTRFHSDRVVTLATKLGAACGIPLVDMPVLRLAAQFHDIGKIGVPD 78 Query: 213 HILLKPGRLDEEELKIMRLHAQIGADILRDSPSVLLQTASQIAHSHHEKWDGSGYPNGLK 272 ++L KPG L +EE +MR H + G I R + + + I HHE +G+GYP+GL+ Sbjct: 79 NVLKKPGPLTQEEWVLMRSHTERGERIFRATGLPIADRIAPIIRHHHEVINGTGYPDGLQ 138 Query: 273 GEDIPLYGRIVAVADVFDALTSSRPYKKGWSLADAQRYLRDNAGSHFDPRCVDAFF 328 GE+IPL RI+AVAD +DA+T++RPY++ + + ++ + G FD V FF Sbjct: 139 GEEIPLMSRILAVADAYDAMTTTRPYREALTHRQSLDFIELDKGVKFDTAIVGVFF 194 >gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [Herminiimonas arsenicoxydans] Length = 457 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 164 RDPETGEHLVRMANYTRIIASHLGLPKAEQDLLLAAAPMHDIGKMGIPDHILLKPGRLDE 223 + P T H R+A YT +IA +GL + L A +HD+GK+G+ + +L KP +LD Sbjct: 287 KSPYTSGHSARVALYTDMIAEAMGLSPERRRWLKRGALLHDVGKLGVSNSVLDKPDKLDR 346 Query: 224 EELKIMRLHAQIGADILRDSPSVLLQTASQIAHSHHEKWDGSGYPNGLKGEDIPLYGRIV 283 +E ++LHA +IL S ++IA +HHE+ DG GYP GLK + I + RI+ Sbjct: 347 DEWDAVKLHATYTENIL--SRIGAFAELARIAGAHHERLDGGGYPRGLKADAISIETRII 404 Query: 284 AVADVFDALTSSRPYKKGWSLADAQRYLRDNAGSHFDPRCVDAF 327 AD+FDA+T+ RPY+ + + G+ DP C +A Sbjct: 405 TTADIFDAITAERPYRGAIPIPRTLEMMATTQGTALDPLCFEAL 448 >gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [Herminiimonas arsenicoxydans] Length = 399 Score = 112 bits (279), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%) Query: 199 AAPMHDIGKMGIPDHILLKPGRLDEEELKIMRLHAQIGADILRDSPSVLLQTASQIAHSH 258 A +HD+GKM + IL KPG+L +EE +++ H G IL SP V + A + H Sbjct: 187 AGLLHDVGKMMVSQSILDKPGQLTDEEFVVVKEHPVEGHKILSVSPDVS-EAALDVCLHH 245 Query: 259 HEKWDGSGYPNGLKGEDIPLYGRIVAVADVFDALTSSRPYKKGWSLADAQRYLRDNAGSH 318 HE++DG+GYP+ L GE+I L+ R+ AV DV+DA+TS+R YK GW +++ R + + G H Sbjct: 246 HERFDGTGYPHRLAGENISLFARMGAVCDVYDAITSNRAYKAGWEPSESLRRMAEWKG-H 304 Query: 319 FDPRCVDAF 327 FDP AF Sbjct: 305 FDPAVFQAF 313 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 5/121 (4%) Query: 1 MKILIVDDDKTNLSLFTHMLGQLPDTDISTC--PDALEALQWCGAHAPDLILLDYMMPGM 58 M+IL+++D+ + +++ L ++ + C + + L A DLI+LD M+P + Sbjct: 1 MRILVIEDEP---KIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLL 57 Query: 59 DGLDFLSRFRALPGQEMTPVIMITADMGLQVRHKALQMTANDFLSKPVNRVELLARVKNM 118 G + L+ R+ ++ PVI +TA ++ R K L++ A+D+L KP VELLAR++ + Sbjct: 58 SGWELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTL 117 Query: 119 L 119 L Sbjct: 118 L 118 >gi|134094530|ref|YP_001099605.1| chemotaxis-specific methylesterase [Herminiimonas arsenicoxydans] Length = 358 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 1 MKILIVDDDKTNLSLFTHMLGQLPDTDI-STCPDALEALQWCGAHAPDLILLDYMMPGMD 59 +K+LIVDD S+ ++ PD ++ PD + A PD++ LD MP MD Sbjct: 3 IKVLIVDDSALIRSVMKEIINSQPDMEVVGVAPDPIIARDLIKQTNPDVLTLDVEMPRMD 62 Query: 60 GLDFLSRFRALPGQEMTPVIMITA--DMGLQVRHKALQMTANDFLSKPVNRVELLARVKN 117 GLDFL + L PV+M+++ + G ++ +AL++ A DF++KP ++ + + + Sbjct: 63 GLDFLEKLMRL---RPMPVVMVSSLTERGSEITLRALELGAIDFVTKP--KMSIQSGMLE 117 Query: 118 MLAMRKSQLAMSQKIEHLAEQVQEKSHQSN 147 M ++ + K A + ++H+S Sbjct: 118 YTEMIADKIRAASKARIKARHIPTEAHKST 147 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 666,693 Number of extensions: 27663 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 17 Length of query: 345 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 263 Effective length of database: 730,157 Effective search space: 192031291 Effective search space used: 192031291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)