BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1040.p
         (322 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [...    67   2e-12
gi|134093840|ref|YP_001098915.1| hypothetical protein HEAR0587 [...    66   2e-12
gi|134096000|ref|YP_001101075.1| hypothetical protein HEAR2840 [...    62   4e-11

>gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398
           [Herminiimonas arsenicoxydans]
          Length = 475

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 6   IEPTLFEKLRSAQALPSPGGVRLTIMRMCAQDDPDMAELIHLVQADPALSGRIIRIVN-- 63
           +   L E+LR    LP+   V   I+ +    + ++ +L   + +DPALS +++++ N  
Sbjct: 1   MNDALLERLRFCTVLPTLPSVAFRIIELVNDPNINLTQLAECIASDPALSAKMLKVANSP 60

Query: 64  VLNAERVRPIASVSMDSMLLVGLQAVRQLALALSLAETTAPASCTNFKLPAFWAHSFAMA 123
           +   +RV   A+    ++ ++G  A   +AL+ SL  + +           FW  +   A
Sbjct: 61  LYTTQRV---ATNLRQAVNMMGTHATVTVALSFSLVRSLSGHEGNTL----FWRRTILAA 113

Query: 124 CGAQAISGHTRVAPLGEMFTTGLLANIGKLTLASAHPSAYSSLLTRPLDASTQLTMEQSL 183
              + +  H       ++   GLL +IG L L S  P  Y+ L     D    L  E++ 
Sbjct: 114 LACRLLGKHYGFNS-DDLLLAGLLQDIGILALRSVAPDEYAELQA-ITDHEELLKAERNR 171

Query: 184 FGFNHLNIAAALMQDWKIPELFCDAVLHYEAPVPSEELPA 223
           FG  H  +   L++ W IPE    A +   A  P  E  A
Sbjct: 172 FGSGHDEVGYWLLKRWGIPEHLSLACIASHADTPGHEAQA 211


>gi|134093840|ref|YP_001098915.1| hypothetical protein HEAR0587
           [Herminiimonas arsenicoxydans]
          Length = 256

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 3/186 (1%)

Query: 31  MRMCAQDDPDMAELIHLVQADPALSGRIIRIVNVLNAERVRPIASVSMDSMLLVGLQAVR 90
           M+    DD D+  +   V  D AL+ + +R  N  +   V+   +    ++ L+G+ +VR
Sbjct: 1   MKSIGPDDDDINIITRKVMLDQALAAKTLRFANS-SFYGVQAKVTTIQQAITLIGVDSVR 59

Query: 91  QLALALSLAETTAPASCTNFKLPAFWAHSFAMACGAQAISGHTRVAPLGEMFTTGLLANI 150
            +  A +L      +S       A W H+ A A  A+ ++ H  V      FT GLL +I
Sbjct: 60  HVVTANALTGYFPSSSSAGLNFIAIWRHAIATAVCARVLARHLHVNQ-DYAFTAGLLHDI 118

Query: 151 GKLTLASAHPSAYSSLLT-RPLDASTQLTMEQSLFGFNHLNIAAALMQDWKIPELFCDAV 209
           G+L L +     Y +++  R L     L  EQ++ G +H     AL   W   +    A+
Sbjct: 119 GRLLLITYFRREYDTVIAYRKLHDCQWLDAEQAIMGIDHAMAGEALAGHWNFSDTIRHAI 178

Query: 210 LHYEAP 215
             +  P
Sbjct: 179 AGHHKP 184


>gi|134096000|ref|YP_001101075.1| hypothetical protein HEAR2840
           [Herminiimonas arsenicoxydans]
          Length = 286

 Score = 61.6 bits (148), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 7/200 (3%)

Query: 16  SAQALPSPGGVRLTIMRMCAQDDPDMAELIHLVQADPALSGRIIRIVNVLNAERVRPIAS 75
           S   +P    + + + R   QD+P+  +   L++ D A++G +++I N       R IAS
Sbjct: 19  SLDNIPPRPALLMALQREIQQDNPNSKKFASLIRRDVAMAGTLLQIANSAFFNLGRHIAS 78

Query: 76  VSMDSMLLVGLQAVRQLALALSLAETTAPASCTNFKLPAFWAHSFAMACGAQAISGHTRV 135
           V  +++ L+GL     +   L L ++       N  +  FW  S   A G   ++  TR 
Sbjct: 79  VE-EAITLIGLNQCNAIMSGLILKKSLG---FGNKMMARFWDGSEKRAIGLSILAKRTRN 134

Query: 136 APLGEMFTTGLLANIGKLTLASAHPSAY-SSLLTRPLDASTQ-LTMEQSLFGFNHLNIAA 193
            P    ++ GL  + G   L  A P  Y  +LL     A+ + L +E    G NH  I A
Sbjct: 135 LPSEIAYSFGLFCDTGIPLLKGAFPKTYLDTLLQANRKAAEEFLQVEDERHGVNHTVIGA 194

Query: 194 ALMQDWKI-PELFCDAVLHY 212
            L + W + PE+     +H+
Sbjct: 195 LLAERWSLAPEVVLAIRMHH 214


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 581,040
Number of extensions: 22051
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 240
Effective length of database: 730,157
Effective search space: 175237680
Effective search space used: 175237680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)