BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1037.p
         (376 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093584|ref|YP_001098659.1| queuine tRNA-ribosyltransferase...   675   0.0  

>gi|134093584|ref|YP_001098659.1| queuine tRNA-ribosyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 375

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/375 (83%), Positives = 346/375 (92%)

Query: 1   MLEFTLLKTDGKARRGRVKLNHGSVETPIFMPVGTYGSVKAMSPLELKEINAQIILGNTF 60
           ML F LL TDG ARRG++ +NHG +ETPIFMPVGTYGSVKAMSPLELKEI+AQIILGNTF
Sbjct: 1   MLNFKLLNTDGNARRGQLTVNHGVIETPIFMPVGTYGSVKAMSPLELKEIDAQIILGNTF 60

Query: 61  HLWLRPGLEVVSKFGGLHKFIGWDKPILTDSGGFQVFSLGEMRKITEEGVHFASPINGDR 120
           HLWLRPG ++V+KFGGLH+F+GWDKPILTDSGGFQVFSLGEMRKITEEGVHF+SPINGD+
Sbjct: 61  HLWLRPGNDIVAKFGGLHEFMGWDKPILTDSGGFQVFSLGEMRKITEEGVHFSSPINGDK 120

Query: 121 LFLSPEISMQIQRVLNSDIVMQFDECTPYEIDGRPATREEAGKSMRMSLRWAKRSKDEFD 180
           LFLSPE+SMQIQRVLNSDIVMQFDECTPYEIDGRPAT +EA KSMRMSLRWAKRS DEF+
Sbjct: 121 LFLSPEVSMQIQRVLNSDIVMQFDECTPYEIDGRPATADEAAKSMRMSLRWAKRSIDEFN 180

Query: 181 RGENPNALFGIVQGGMFEGLRDESLAGLEQLGFDGFAIGGLSVGEPKEDMMRVLEHVGPR 240
           R ENPNALFGIVQGGMFE LRDESLAGLE + F G AIGGLSVGEPKEDM+RVL+HVGPR
Sbjct: 181 REENPNALFGIVQGGMFEHLRDESLAGLEDINFHGVAIGGLSVGEPKEDMLRVLQHVGPR 240

Query: 241 LPANKPHYLMGVGTPEDLVEGVANGVDMFDCVMPTRNARNGWIFTRYGDVKIKNAKYKND 300
           LPANKPHYLMGVGTPEDLV+GVANG+DMFDCVMPTRNARNGW+FTR+GD+KIKNA+YK+D
Sbjct: 241 LPANKPHYLMGVGTPEDLVQGVANGIDMFDCVMPTRNARNGWLFTRFGDIKIKNARYKDD 300

Query: 301 DRPFDESCDCYACKNFSRAYLHHLHRAGEILGARMNTVHNLHYYLQLMQEMRDAIDAGTF 360
            +P D SC CYAC+NFSRAYLHHLHR GEILGAR+NT+HNLHYYL LM+EMR+AI  G F
Sbjct: 301 KKPLDASCGCYACRNFSRAYLHHLHRTGEILGARLNTIHNLHYYLDLMREMREAISEGRF 360

Query: 361 QGFVKKFKEDRARGV 375
           Q FVK+F  DRARG 
Sbjct: 361 QLFVKQFHADRARGA 375


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 772,910
Number of extensions: 34524
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 293
Effective length of database: 726,862
Effective search space: 212970566
Effective search space used: 212970566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)