BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1036.p
         (338 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093583|ref|YP_001098658.1| S-adenosylmethionine:tRNA ribos...   540   e-155

>gi|134093583|ref|YP_001098658.1| S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase [Herminiimonas
           arsenicoxydans]
          Length = 341

 Score =  540 bits (1392), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/337 (78%), Positives = 291/337 (86%)

Query: 1   MYSLSDFDFALPPELIAQTPLAERSASRLLQVQGAQLSDRRFSDIVDLLQPGDLLVFNDT 60
           MYSLSDFDF LP ELIAQTPLAERSASRLL V    + DR F+DIVDLL PGDLLVFNDT
Sbjct: 1   MYSLSDFDFELPQELIAQTPLAERSASRLLHVAQDGMIDRAFADIVDLLNPGDLLVFNDT 60

Query: 61  RVIKARLFGVKETGGKIEALVERILDARTVHAQVRASKSPPPGTRIRLADAFDVTVGERF 120
           RV+KAR FGVKETGGK+E LVER++D+  VHAQ+RASKSP PG +IRLADAFDV VGER 
Sbjct: 61  RVLKARFFGVKETGGKVEVLVERVIDSAHVHAQIRASKSPVPGMKIRLADAFDVIVGERA 120

Query: 121 GEFYTLHFPADAFDLLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180
           GEFY L FP D F L+E +G LPLPPYI+H ADAYDETRYQTVYAK PGAVAAPTAGLHF
Sbjct: 121 GEFYELQFPGDIFALIEAHGRLPLPPYIEHAADAYDETRYQTVYAKTPGAVAAPTAGLHF 180

Query: 181 DQTLLEQLSARGVQQAFVTLHVGAGTFQPVRVEDLSQHQMHSEWYTIPPETVAAVRAAKA 240
           DQ LL+ L A+GVQ A+VTLHVGAGTFQPVR E+L++H MHSEWYTI  ETV AV AA+A
Sbjct: 181 DQALLDTLKAKGVQFAYVTLHVGAGTFQPVRNENLAEHNMHSEWYTISQETVGAVHAAQA 240

Query: 241 AGGRVVAVGTTSMRALESGSQSGELKAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300
           AG  +VAVGTTSMRALES SQSG L+AGS DT+LFITPGYTFKTV +L+TNFHLPKSTLL
Sbjct: 241 AGHNIVAVGTTSMRALESASQSGSLQAGSADTRLFITPGYTFKTVTRLITNFHLPKSTLL 300

Query: 301 MLVSAFAGYEHIRAAYAHAIAQKYRFFSYGDAMLLTR 337
           MLVSAFAGY+ IRAAY HAI+Q+YRFFSYGDAM LTR
Sbjct: 301 MLVSAFAGYDAIRAAYQHAISQRYRFFSYGDAMFLTR 337


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 621,484
Number of extensions: 24084
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 256
Effective length of database: 730,157
Effective search space: 186920192
Effective search space used: 186920192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)