BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1035.p (707 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093582|ref|YP_001098657.1| ATP-dependent DNA helicase RecG... 1051 0.0 gi|134095113|ref|YP_001100188.1| transcription-repair ATP-depend... 220 2e-58 >gi|134093582|ref|YP_001098657.1| ATP-dependent DNA helicase RecG [Herminiimonas arsenicoxydans] Length = 770 Score = 1051 bits (2719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/676 (77%), Positives = 585/676 (86%), Gaps = 1/676 (0%) Query: 33 ENKLAKLGLHNDMDLVLHLPLRYEDETTLMSIAQASLRGLQTVQVEGVVSACEVQFRPRR 92 ++KL KLGL +DMD VLHLPLRYEDET + SI++A ++VQVEGVV+ACEV FRPRR Sbjct: 95 DDKLIKLGLRSDMDKVLHLPLRYEDETEIRSISEAGFIFGRSVQVEGVVTACEVAFRPRR 154 Query: 93 QLIVTIGDDSGQLTLRFLNFYGSQTKQLAEGTRVRVRGELRHGFFGAEMVHPSYKVVNEG 152 QL+VTI DDSGQL +RFLNFYGSQ KQ+AEG RVR RGE+RHGFFGAEMVHPSYK+V EG Sbjct: 155 QLVVTISDDSGQLVMRFLNFYGSQVKQMAEGNRVRARGEVRHGFFGAEMVHPSYKMVTEG 214 Query: 153 APLPDVLTPVYPAGEGLSQAYLRKAIANAMNRLDWSDTLPPSMLETLNLAAFEPSVRLLH 212 APLP LTPVYPAGEGLSQ LRK I +AM R++W DTL + +L+L +FEP+VRLLH Sbjct: 215 APLPSALTPVYPAGEGLSQTLLRKTIIDAMARIEWRDTLSEQLRSSLDLMSFEPAVRLLH 274 Query: 213 NPPPEVDEHALIEKSHPAWIRMKFDELLAQQLSLKRAQAARRAKTARALPVSGRITEELT 272 NPPP++DE L ++SH AW+RMKFDELLAQQLS+KRAQ ARR K A LP G++++ Sbjct: 275 NPPPDIDESVLADRSHAAWVRMKFDELLAQQLSMKRAQIARREKGAAVLPTIGKLSKAFL 334 Query: 273 KILPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGSGKTVVAALAAAQAIDSGCQAVL 332 K LPF LT AQQRVLEE+RADL+QSFPMQRLLQGDVGSGKTVVAA+AAAQAIDSG QAVL Sbjct: 335 KQLPFSLTAAQQRVLEEVRADLKQSFPMQRLLQGDVGSGKTVVAAIAAAQAIDSGFQAVL 394 Query: 333 MAPTEILAEQHFRKIAAWMEPLDIGVAWLSGSQKKKEKTEALAHIESGAARLVIGTHALI 392 MAPTEILA+QHFRKIA WMEPL + VAWL+GS KKKEK EA A IESG A+L+IGTHALI Sbjct: 395 MAPTEILADQHFRKIAGWMEPLGVNVAWLTGSLKKKEKLEAKARIESGVAQLIIGTHALI 454 Query: 393 QDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNAADPDA-AAVPHQLMMSATPIPRTLA 451 Q+ VQF LGLVIVDEQHRFGVGQRL LRNK +A+ A +PHQLMMSATPIPRTLA Sbjct: 455 QEDVQFSKLGLVIVDEQHRFGVGQRLVLRNKGLDASAAAAQQKIPHQLMMSATPIPRTLA 514 Query: 452 MTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIQRVHAAALEGKQIYWVCPLIEESE 511 MTYYADLEVSVIDELPPGR+PIVTRVIDQNRRDEVI+RVHAAALEG+Q+YWVCPLIEESE Sbjct: 515 MTYYADLEVSVIDELPPGRTPIVTRVIDQNRRDEVIERVHAAALEGRQVYWVCPLIEESE 574 Query: 512 ALQLQTATDTHAALSAALPDLKIGLVHGRMKPVEKQVVMEGFSRGAIHLLVATTVIEVGV 571 ALQLQTATDTH L AALPDL++GLVHGRMKP +KQ VM+ F+RG IH+LVATTVIEVGV Sbjct: 575 ALQLQTATDTHQTLVAALPDLQVGLVHGRMKPADKQQVMDAFTRGDIHVLVATTVIEVGV 634 Query: 572 DVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLATMRETT 631 DVPNASLMVIEHAERFGLSQLHQLRGRVGRGS ASVCLLLYQGPLG AKQRL MRE+T Sbjct: 635 DVPNASLMVIEHAERFGLSQLHQLRGRVGRGSTASVCLLLYQGPLGMVAKQRLRIMREST 694 Query: 632 DGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLATDQWLVEKARDTAQALLQHAPDIVD 691 DGFEIAR+DL+IRGPGEFLGARQSG+AMLRFADL TDQWLV++ARD AQ LL+ P V Sbjct: 695 DGFEIARKDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDRARDLAQTLLRDDPATVG 754 Query: 692 RHLARWLGGREDFLKV 707 HLARWLG RED+LKV Sbjct: 755 AHLARWLGAREDYLKV 770 >gi|134095113|ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas arsenicoxydans] Length = 1148 Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/414 (36%), Positives = 217/414 (52%), Gaps = 28/414 (6%) Query: 252 ARRA-KTARALPVSGRITEELTKILPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGS 310 ARRA + + S F+ T Q + + D+ PM RL+ GDVG Sbjct: 578 ARRALREGHSFEYSAHDYAAFADSFGFEETVDQAAAINAVIQDMTSGKPMDRLICGDVGF 637 Query: 311 GKTVVAALAAAQAIDSGCQAVLMAPTEILAEQHFRKIAAWMEPLDIGVAWLSGSQKKKEK 370 GKT VA AA A+ G Q ++APT +LAEQH + A + +A LS + KE Sbjct: 638 GKTEVALRAAFIAVLGGKQVAILAPTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEI 697 Query: 371 TEALAHIESGAARLVIGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNAADP 430 T+A+ + G +VIGTH L+ +F LGLVI+DE+HRFGV Q+ L+ A+ Sbjct: 698 TQAMKGMADGTIDIVIGTHKLLSADTKFSRLGLVIIDEEHRFGVRQKETLKALR---AEV 754 Query: 431 DAAAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIQRV 490 D L ++ATPIPRTL M + S+I P R I T V +N VI+ Sbjct: 755 DV------LTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSENA--SVIREA 806 Query: 491 HAAALE-GKQIYWVCPLIEESEALQLQTATDTHAALSAALPDLKIGLVHGRMKPVEKQVV 549 L+ G Q+Y++ +E T + A L +P+ +IG+ HG++ + + + Sbjct: 807 CLRELKRGGQVYFLHNEVE--------TIENRKAMLEELMPEARIGVAHGQLHERDLERI 858 Query: 550 MEGFSRGAIHLLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCL 609 M F ++L+ TT+IE G+DVP A+ +++ A++FGL+QLHQLRGRVGR + Sbjct: 859 MRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAY 918 Query: 610 LL---YQGPLGGTAKQRLAT---MRETTDGFEIARRDLDIRGPGEFLGARQSGE 657 LL QG L A++RL M E GF +A DL+IRG GE LG QSGE Sbjct: 919 LLVHDVQG-LSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGDNQSGE 971 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,256,601 Number of extensions: 49936 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 2 Length of query: 707 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 619 Effective length of database: 710,387 Effective search space: 439729553 Effective search space used: 439729553 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)