BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1034.p
         (231 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094702|ref|YP_001099777.1| hypothetical protein HEAR1479 [...   191   2e-50

>gi|134094702|ref|YP_001099777.1| hypothetical protein HEAR1479
           [Herminiimonas arsenicoxydans]
          Length = 223

 Score =  191 bits (485), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/221 (52%), Positives = 144/221 (65%), Gaps = 7/221 (3%)

Query: 12  TSRRLLCPICQRALTACICHWTSPIDHAIDVLILQHPLEVSNAKNSVRLLHLSLPYSKLV 71
           TS+RL C  C R    CIC W +P++H ++VL LQHPLEV NAKN+ RLLH+SLP+S+LV
Sbjct: 6   TSKRLYCARCLRPQRTCICQWVTPLEHDVEVLFLQHPLEVGNAKNTARLLHMSLPHSRLV 65

Query: 72  VGSVFEPEQLHTLLHAP--SRLRNVPDSETVHPVLLYTDDASTAETTYFDARTMRVEEQE 129
           VG  F  ++L  LL AP  S        +TV P+LLY ++A   E       T  V +  
Sbjct: 66  VGETFSEQELQALLRAPFDSADEVHAQGKTVCPLLLYPENAE--EQALISPLT--VAQIT 121

Query: 130 PLKRIRLVVLDGTWRKSRKMLFENPLLQTLPRMMLIDTPTSRYTIRKSHKPEQLATLEAT 189
              RIRL+V+DGTWRKSRKML  NPLLQ LPR+ L D P S Y IRK+HK +QL++ EAT
Sbjct: 122 AETRIRLIVIDGTWRKSRKMLHLNPLLQQLPRLPLRDPPPSHYRIRKAHKADQLSSFEAT 181

Query: 190 GYALMQLERNSEKYHPLLTAFDNFVL-QQGYMRMHAQAARR 229
            YALM LE N+EKY PLL AFD FV  QQ ++ M A    R
Sbjct: 182 CYALMHLEENTEKYKPLLAAFDGFVTQQQAHIGMQADMRER 222


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 414,451
Number of extensions: 15330
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 152
Effective length of database: 740,042
Effective search space: 112486384
Effective search space used: 112486384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)