BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1033.p
         (105 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093956|ref|YP_001099031.1| hypothetical protein HEAR0710 [...   134   9e-34

>gi|134093956|ref|YP_001099031.1| hypothetical protein HEAR0710
           [Herminiimonas arsenicoxydans]
          Length = 103

 Score =  134 bits (337), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 80/102 (78%)

Query: 4   IQIQAMIMGQSYTLACQEGEQAALHHAVAYLDQKMRAIRDAGRIKGTDRIAVMAGLGIAA 63
           IQ+   IMGQSY LAC+EGE+ AL  AVAYLD KM AIRDAG++KG DRIAVMA LG+ A
Sbjct: 2   IQLDVSIMGQSYKLACKEGEEGALQEAVAYLDGKMCAIRDAGKLKGNDRIAVMAALGVTA 61

Query: 64  ELLSMQRSEGPFAGMTIAQWQQQIAAITEVVDQALAPQEKLF 105
           ELL+ +  +GP + MT+++ +Q+IAA+ E +D ALAPQE LF
Sbjct: 62  ELLATKSPDGPLSDMTMSEVKQKIAAMHETLDAALAPQENLF 103


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 158,579
Number of extensions: 5241
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 36
Effective length of database: 772,992
Effective search space: 27827712
Effective search space used: 27827712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 122 (51.6 bits)