BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1030.p (250 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 366 e-103 gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herm... 78 5e-16 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 77 6e-16 gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrie... 73 1e-14 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 72 3e-14 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 366 bits (939), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/248 (71%), Positives = 204/248 (82%), Gaps = 2/248 (0%) Query: 1 MVVLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKELGADKVLPLVLDVTSKD 60 M+VLITGA++GFGA MARKFA GH+VIA GRRK+RLDDL ELGA VL + +DVT K Sbjct: 1 MIVLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELGA-AVLTVAMDVTDKH 59 Query: 61 SINAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKGLVTITHALLP 120 SI A L SL +W+E+DVLINNAGLALG+ PA +L WETMI+TN KGLVT+T +LP Sbjct: 60 SITAALDSLPAEWREIDVLINNAGLALGVAPAQTASLEQWETMIETNCKGLVTVTRLVLP 119 Query: 121 EMVKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNLAPGL 180 +M+KR RGTIIN+GS AGAY YPG NVYGATKAFV QFTLNLRADLVGTGVRATNLAPGL Sbjct: 120 DMLKRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNLAPGL 179 Query: 181 CGGTEFSNVRFKGDDGAAAKVYEGTTPLTAEDIAEAAFWVATMPAHVNINYMELMPTCQG 240 GGTEFSNVR DD AAAKVYEGT PL+ DIA+ A+W+AT+P HVNIN++E+MPTCQG Sbjct: 180 AGGTEFSNVRLS-DDAAAAKVYEGTVPLSPGDIADTAYWIATLPPHVNINHIEIMPTCQG 238 Query: 241 FSPFNIKR 248 F P IKR Sbjct: 239 FGPLLIKR 246 >gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 77.8 bits (190), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 3 VLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKEL-GADKVLPLVLDVTSKDS 61 V ITGA++G GAA+AR++A G + RR E L +L L A++ LDV++ + Sbjct: 11 VFITGASSGLGAALARQYANEGATLGLVARRGEVLRELAASLPNAERHRVYALDVSNHAA 70 Query: 62 INAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKGLVTITHALLPE 121 + A + +D++I NAG++ G + L +E + TNV V + Sbjct: 71 LANAAADFIAAAQGIDIVIANAGISRGTLTEYTEDLHVFEKIFATNVTATVATFAPFIAT 130 Query: 122 M-----VKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNL 176 M + ++ +GSVAG PG Y A+KA V + +LR +L G++ + Sbjct: 131 MKAQAAAGQTGARLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELQKDGIKVVTI 190 Query: 177 APG 179 APG Sbjct: 191 APG 193 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 77.4 bits (189), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 10/181 (5%) Query: 24 GHQVIAAGRRKERLDDLVKELGAD--KVLPLVLDVTSKDSINAGLASLSGQWKEVDVLIN 81 G QV+ A RR +RL +L E+ A+ + LDVT SI + +A + +D+L+N Sbjct: 3 GAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILVN 62 Query: 82 NAGLALGLGPAHEVALSDWETMIDTNVKGLVTITHALLPEMVKRGRG------TIINLGS 135 NAG+A G +V ++ ++DTN +G + + M+ R +G IIN+ S Sbjct: 63 NAGVA-ARGRLLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIAS 121 Query: 136 VAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNLAPGLCGGTEFSNVRFKGDD 195 VAG P Y +KA + T + + G+ + PG GTE + FK + Sbjct: 122 VAGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYI-GTELNQEYFKSEQ 180 Query: 196 G 196 G Sbjct: 181 G 181 >gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 255 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 18/212 (8%) Query: 3 VLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKELGADKVLPLVLDVTSKDSI 62 V + GA+ G GAA A+K G +V + RR E L + G L VLD+ S+ Sbjct: 13 VWVIGASTGIGAATAQKLLAQGARVALSARRPELLAMVAD--GHPNALIAVLDIVDHASV 70 Query: 63 NAGLASLSGQWKEVDVLINNAGLALGLGPAHEVA-----LSDWETMIDTNVKGLVTITHA 117 +A + QW+ +D+++ AG HE+ LS +ID N++G Sbjct: 71 SAAHTLIMQQWQGIDLVLIIAG------GYHEMRADSFDLSAAYRLIDLNIRGTYNCLDL 124 Query: 118 LLPEMVKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNLA 177 +LP ++ +G G I + SVAG P +YG TKA + +L DL G+ A + Sbjct: 125 VLPTLLAQGNGGIGIVASVAGYSGLPKALIYGPTKAALINLCESLYIDLHPRGIGAYLIN 184 Query: 178 PG-----LCGGTEFSNVRFKGDDGAAAKVYEG 204 PG L G +F + AA ++ G Sbjct: 185 PGFVETPLTAGNDFPMPAMISANEAAQELLHG 216 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 72.0 bits (175), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 10/187 (5%) Query: 2 VVLITGATAGFGAAMARKFAGNGHQVIAAGRRK-----ERLDDLVKELGAD-KVLPLVLD 55 + L+TG G G A+ K A G+QV+ E L + K G D + P D Sbjct: 4 LALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATM-KASGYDFRAYPC--D 60 Query: 56 VTSKDSINAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKGLVTIT 115 V+ DS +A + + E+DVL+NNAG+ + ++ +DW+ ++ TN+ + +T Sbjct: 61 VSDYDSAQQCVALIKKEIGEIDVLVNNAGITRDM-TFKKMEKTDWDAVMGTNLDSVFNMT 119 Query: 116 HALLPEMVKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATN 175 + MV+RG G IIN+ SV G Y A KA + FT L ++ V Sbjct: 120 KPVCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNT 179 Query: 176 LAPGLCG 182 ++PG G Sbjct: 180 ISPGYIG 186 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 458,412 Number of extensions: 18619 Number of successful extensions: 66 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 11 Length of query: 250 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 171 Effective length of database: 740,042 Effective search space: 126547182 Effective search space used: 126547182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)