BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1028.p
         (234 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095581|ref|YP_001100656.1| inner membrane protein [Hermini...   386   e-109
gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB prote...    90   1e-19
gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB prote...    88   3e-19

>gi|134095581|ref|YP_001100656.1| inner membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score =  386 bits (992), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/237 (81%), Positives = 207/237 (87%), Gaps = 10/237 (4%)

Query: 1   MNVTQDLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFW 60
           M VTQDLSF+ LIANASVLVQLVM LL+  SV SWTYIFRKMF I++AR QTEEFER FW
Sbjct: 1   MTVTQDLSFVHLIANASVLVQLVMALLVGVSVMSWTYIFRKMFAIKNARTQTEEFERAFW 60

Query: 61  SGGNLSALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPG---LLL 117
           SGG+L+ALYQDA SNRRK+ G  GALERIF+AGM EF K++AS        DP    + L
Sbjct: 61  SGGDLNALYQDATSNRRKSSGSTGALERIFEAGMSEFNKSRASH-------DPSQASVRL 113

Query: 118 DGARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLA 177
           DGARRAMRAAYQREMD LESHLAFLASVGSVSPYVGLFGTVWGIMN+FRGLANVQQATLA
Sbjct: 114 DGARRAMRAAYQREMDGLESHLAFLASVGSVSPYVGLFGTVWGIMNSFRGLANVQQATLA 173

Query: 178 AVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQAR 234
           AVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLA+RFESF+EEFSNILQRQ R
Sbjct: 174 AVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAMRFESFVEEFSNILQRQTR 230


>gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 89.7 bits (221), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 105/238 (44%), Gaps = 15/238 (6%)

Query: 1   MNVT---QDLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFER 57
           MN T   Q L      A    +   V   LL  S+ SW YI  K ++    R      E 
Sbjct: 1   MNSTVAEQGLGLSHYWAQGDAVSHAVAYALLIMSILSWYYILSKGWSAWRIRRSAAALEN 60

Query: 58  VFWSGGNLSALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLL 117
            FW    L     DA++  R    E   +     A   E         +     DPG L+
Sbjct: 61  -FWQAPTL----PDAIAAIRLTDSEN--VYTPLAAQSVEAANITPHANSLNANTDPGELI 113

Query: 118 DGARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLA 177
               R +R    R    LE+ L  LASVGS +P++GLFGTVWGI +A   ++      + 
Sbjct: 114 T---RTLRQEINRVSSRLENGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSASGTVQID 170

Query: 178 AVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAI-RFESFIEEFSNILQRQAR 234
            VA  + EALI TA+GL  AIPAV+AYN ++  ++R+ +   ++F  +    L    R
Sbjct: 171 KVAGPVGEALIMTALGLAVAIPAVLAYNAFTR-VNRITLAELDAFAHDLHAYLTTGTR 227


>gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score = 88.2 bits (217), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 96/199 (48%), Gaps = 19/199 (9%)

Query: 11  SLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTI----RSARVQTEEFERVFWSGGNLS 66
           SL +    + + V +LL++ S+ SW  I  K   +    R+AR    EF    W      
Sbjct: 10  SLWSQGDFVTKGVAILLVAMSIASWYVIATKALQLMQYRRAARAAGHEF----WD----- 60

Query: 67  ALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLDGARRAMRA 126
                +LS      G G     I +AG+   T  +   A +G   D   + D    ++R 
Sbjct: 61  ---ATSLSEGTATLGSGNPFASIAEAGV---TAMRHHEAHKGHLHDELSVSDWITLSLRQ 114

Query: 127 AYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAEA 186
           A       L++ +A LASVGS +P+VGLFGTVWGI +A   +    QA++  VA  + EA
Sbjct: 115 AIDETSAKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEA 174

Query: 187 LIATAIGLFAAIPAVVAYN 205
           LI TA+GL  AIPA   YN
Sbjct: 175 LIMTALGLAVAIPATFGYN 193


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 383,882
Number of extensions: 15377
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 234
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 155
Effective length of database: 740,042
Effective search space: 114706510
Effective search space used: 114706510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)