BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1027.p
         (144 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095582|ref|YP_001100657.1| putative biopolymer transport p...   189   5e-50
gi|134093597|ref|YP_001098672.1| putative biopolymer transport p...    57   4e-10
gi|134095827|ref|YP_001100902.1| biopolymer transport protein Ex...    56   8e-10

>gi|134095582|ref|YP_001100657.1| putative biopolymer transport
           protein ExbD/TolR; putative TOLR-related transport
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 146

 Score =  189 bits (480), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 111/140 (79%)

Query: 5   SMRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSDYIEI 64
           SMRGGR RKFKSEINVVPYIDVM+VLL+IFMV  P+ NPS I LP A KST PP++YI I
Sbjct: 7   SMRGGRNRKFKSEINVVPYIDVMMVLLVIFMVTAPMVNPSEIELPNAAKSTLPPTEYIRI 66

Query: 65  ALKPNAQATIRINGPKSGGKKAETVTGKTDLAERLRQLHEDNPDLAVMISADKDIKYDDV 124
            LK +A AT+ + G K G K  ETV  + +L ++L+ L  DNPD+AVMI+ADK+IKYD+V
Sbjct: 67  DLKADASATVSVQGKKGGAKPGETVATRGELGKKLQTLVADNPDIAVMIAADKNIKYDEV 126

Query: 125 VQVISEAKKQGIARVGLATK 144
           +Q ISEAKK GI+RVGLATK
Sbjct: 127 IQAISEAKKLGISRVGLATK 146


>gi|134093597|ref|YP_001098672.1| putative biopolymer transport
           protein ExbD [Herminiimonas arsenicoxydans]
          Length = 137

 Score = 57.0 bits (136), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 13/133 (9%)

Query: 14  FKSEINVVPYIDVMLVLLIIFMVATPITNPSV-INLPTAGKSTQPPSDYIE-IALKPNAQ 71
           F  EIN  P +DVMLVLLIIF++  P+ N +V ++LP A  + QP     E I L  +A 
Sbjct: 12  FNPEINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPRA--ANQPNEVKPETINLSIDAA 69

Query: 72  ATIRINGPKSGGKKAETVTGKTDLAERLRQLHEDNPDLAVMISADKDIKYDDVVQVISEA 131
             +  N           +  ++ LA R+    +  P   + + A++   Y+ V QV++ A
Sbjct: 70  GKVYWNN---------EILDESQLAARVADAAKVTPQPELHLRAERTTPYEKVAQVMAAA 120

Query: 132 KKQGIARVGLATK 144
           +  G++++G  T+
Sbjct: 121 QSGGLSKMGFVTE 133


>gi|134095827|ref|YP_001100902.1| biopolymer transport protein ExbD
           [Herminiimonas arsenicoxydans]
          Length = 127

 Score = 55.8 bits (133), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 11/129 (8%)

Query: 16  SEINVVPYIDVMLVLLIIFMVATPITNPSV-INLPTAGKSTQPPSDYIEIALKPNAQATI 74
           ++INV P +DVMLVLL+IF++  P+   ++ ++LP+A +S   P++   I+L  N +  I
Sbjct: 2   ADINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSA-QSAPAPTEPSTISLSINGEGAI 60

Query: 75  RINGPKSGGKKAETVTGKTDLAERLRQLHEDNPDLAVMISADKDIKYDDVVQVISEAKKQ 134
             N         + VT + +L  R     +  P   + + AD+  +Y+ + QV++ A+  
Sbjct: 61  FWNN--------DAVT-QDELTSRFAIAAKQQPQPQLQLRADRGTRYEVIAQVMAAAQGN 111

Query: 135 GIARVGLAT 143
           G+ ++G  T
Sbjct: 112 GLTKLGFVT 120


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 263,524
Number of extensions: 9806
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 3
Length of query: 144
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 71
Effective length of database: 759,812
Effective search space: 53946652
Effective search space used: 53946652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)