BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1026.p
         (330 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095583|ref|YP_001100658.1| putative tolA-related transport...   199   2e-52

>gi|134095583|ref|YP_001100658.1| putative tolA-related transport
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 291

 Score =  199 bits (505), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/338 (44%), Positives = 202/338 (59%), Gaps = 55/338 (16%)

Query: 1   MSDNAHYTIPKAPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYK--- 57
           M++++ Y +PK PGRWRAITLA  +HVAL +FFWIGI WQSETP+ V+AEIWD Q K   
Sbjct: 1   MTEHSPYIVPKEPGRWRAITLAAAVHVALLVFFWIGIDWQSETPVAVKAEIWDMQAKEAA 60

Query: 58  --EAAPLPTPPQPEPQPVVVEPPPQPQPQPEPKPIPPKVIDEPKVEKPDIALQKEKEKKR 115
                P P P        VV+  P+ +P   P   PPKV         DIAL+KEK++K 
Sbjct: 61  PLPPEPEPVPQPKPEPKPVVKETPKAEPVAPP---PPKV---------DIALEKEKKRKE 108

Query: 116 KEEQEKQQKLEQEKAEKAKAEKDKADKLKAEKEKAEKEQAEREKKEKLEADKQKKLKEEK 175
           +E ++       + AE+A             KEK  K++AE EK+EKL+  + +K K E+
Sbjct: 109 QERKD-------QLAEEA-------------KEKKLKQKAELEKQEKLKEQEAEKKKAEQ 148

Query: 176 QKEEEAKKKADAEKQAADKKKQQQAAADAKAAEQRRQEDLKRMMGQATSATGGTGTAAKS 235
           QK+ +A             KK+ Q   DA+ +E+RR E+L R+ G   S  GGTG AAKS
Sbjct: 149 QKKADA------------DKKRLQDQRDAELSEKRRAEELSRLTGAIGS--GGTGQAAKS 194

Query: 236 QGPKGSPD--YANRLGAKIKGNTTFDN-AGVSGNPAGEYTVELFPDGTVRSVRVNKPSGV 292
           QG  G  D  YA+++ AKI+ NT F+    +SGNP  EY VEL PDG++R +R+ K SG+
Sbjct: 195 QG-SGRADGAYADKIRAKIRSNTIFNVPPELSGNPQVEYDVELLPDGSLRGLRLRKSSGL 253

Query: 293 PGFDEAVRTAVMKSQPFPADKDGKVPSSFTFTHYPKDQ 330
           PGFDEAV+ A+ +SQPFP D+ G VP   T  H PKDQ
Sbjct: 254 PGFDEAVKRAIERSQPFPPDQSGSVPGRLTVVHKPKDQ 291


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.306    0.125    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 379,207
Number of extensions: 13561
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 248
Effective length of database: 730,157
Effective search space: 181078936
Effective search space used: 181078936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 129 (54.3 bits)