BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1023.p
         (251 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095586|ref|YP_001100661.1| putative transmembrane protein ...   322   1e-89

>gi|134095586|ref|YP_001100661.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 245

 Score =  322 bits (825), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 196/245 (80%), Gaps = 3/245 (1%)

Query: 7   LKSVTVAAMLAATAFLPLTARAGLFDDDEARKAILDIRSKIEALQRDVGNKADKNSVLTL 66
           +K   +AA++AA +   L+A A LF DDEAR+AILD+R+K++ALQ+   +KA+  +VL L
Sbjct: 4   IKKTLIAALMAAFSCASLSAHAALFGDDEARRAILDVRTKVDALQQ---SKAESTAVLEL 60

Query: 67  SDRNDNLQSQIAALRGQIEVLTNEITNAQQRQKDFYVDLDARLRKLEPQQVQVDGQTVAV 126
           +++N+ L+ +IA LRGQIEVL+NE+ NAQQRQKDFYVDLD RLRKLEPQ V VDGQ  +V
Sbjct: 61  ANQNEQLKQEIARLRGQIEVLSNEVANAQQRQKDFYVDLDNRLRKLEPQIVAVDGQEASV 120

Query: 127 GVSEQQAYDAALSQFKGGDYKGAANAFADFLKRYPQSGYAPSAQYWQGNSLYAQRDYKGA 186
            +SEQ+ YD AL+ FK GDYK +  AFADF++RYPQS YAPSAQYW GN+ YAQRDY+ A
Sbjct: 121 ELSEQRMYDNALALFKAGDYKKSGTAFADFIQRYPQSAYAPSAQYWIGNAYYAQRDYRNA 180

Query: 187 IAAQQVVVKNYPDNPKAADALLNIASSQAELKDKAGAKKTLEQLIAKYPNTPAAQTGKER 246
           I AQQ ++K YP NPKAADA+LNIASS  ELKD+  AKK LE L+A+YPNTPAAQT KER
Sbjct: 181 ITAQQALLKKYPANPKAADAMLNIASSYTELKDRTAAKKALESLVAQYPNTPAAQTAKER 240

Query: 247 MASLK 251
           +A+ K
Sbjct: 241 LANFK 245


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.127    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 428,463
Number of extensions: 16361
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 172
Effective length of database: 740,042
Effective search space: 127287224
Effective search space used: 127287224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)