BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1021.p
         (566 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095057|ref|YP_001100132.1| putative signal peptide [Hermin...   365   e-102

>gi|134095057|ref|YP_001100132.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score =  365 bits (937), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 316/552 (57%), Gaps = 11/552 (1%)

Query: 21  LVLAGLAPLASAQTPPDAGTILQQLQ-PALPAPPASSAPSLKLEPRA--ESALPQSAPFE 77
           LV+ G+A    AQTPP+AG++ QQ++    P  PA   P +++E  A   +A+       
Sbjct: 14  LVVCGVA---FAQTPPNAGSLNQQIEREHAPLAPAKPIPEIRIEQDAAPTAAVSDHQKIL 70

Query: 78  VKRLQITGNTVFATESLHELVAGEEGKSLTLAQVNTLAERITRYYHQQGYPLARAIIPAQ 137
           V+ LQ+TG  V+A  +L ++      + LTL+++  +A +I RYYH +GY LA+A +PAQ
Sbjct: 71  VRSLQVTGAHVYAEAALLDVTGFSASRELTLSELRGMASKIARYYHVRGYLLAQAYLPAQ 130

Query: 138 TIRDGVVVIQVVEARYGQVRLNNQSAVRDGLLQATLDGLQSGAVIEDDALNRSLLLLSDV 197
            I+DGVV I V+E  YG+V + N + + D L    L GL S   +    L  SLLLLSD+
Sbjct: 131 DIKDGVVTIAVLEGHYGKVTVRNSTNLSDDLANGLLSGLNSSDAVSIAPLETSLLLLSDL 190

Query: 198 PGVAVAATLQPGASVGSSDVTVNTTTNPTTLGTVALDNYGNRYIDRVRVSGNLNVVNPLR 257
           PGV V +TL PGASVG+SD+ V+ T      G V +DN GNRY    RV   +N+ NP  
Sbjct: 191 PGVNVRSTLVPGASVGASDLIVDVTPGQRVTGAVDVDNGGNRYTGAHRVGATVNINNPTG 250

Query: 258 HGDLLSATVLSTGSGMNYGRLSYDILVNGQGTHIGTAYSYLRYKLGSELSALGANGTASV 317
            GD+ +   L++GSG+NY R SY + ++      G AY+ +RY+LG E  +L ANGTA +
Sbjct: 251 LGDVATLRALTSGSGLNYARASYQVQID--RAKAGVAYASMRYRLGEEFESLQANGTAQI 308

Query: 318 VSLWGRHPLLRSREANVYAQLQLDGKRLHDHVDASALRTDRHLLNWVMSLNGDIRDNLLA 377
            S++G  PL+RSR  N+YA +  D K   D VD++A R D+     + SL GD RD    
Sbjct: 309 ASVYGSVPLIRSRSNNLYAVINFDAKTFQDKVDSTATRADKKARVAMASLTGDHRDGFGG 368

Query: 378 GGISIWSLGWTSGRVFFDDAAAASADAAAGQTRGGFAKWNANFSRLQGISQRDAVYLNLA 437
           GG+S ++  WT+G++    AA+ +ADAA  Q+ G + K   N  RLQ ++   ++Y    
Sbjct: 369 GGLSTYAFTWTTGQIDIKSAASLAADAATVQSNGHYDKLGFNAMRLQRVTDTLSLYAAAN 428

Query: 438 AQWSDRNLDSAEKMTAGGPYTVRAYDIGAMSGDIGYVGTIEWRH---ELGNAWSGQWQAI 494
            Q + +NLD++EKM  GG   VRAY  G    D GYV  +E R     L    SGQ Q I
Sbjct: 429 GQLASKNLDTSEKMGLGGVNGVRAYPEGEAYADQGYVLNLEVRALLPRLSERQSGQMQLI 488

Query: 495 AFLDSAYVKVNQRQWTSGENSGSLSGAGVGMNWSGPDQWRASVSVATRVGARPSIVASQP 554
            F+D+    +N+  W +G+N  +LSGAGVG NW   D +      A ++G   ++ A   
Sbjct: 489 GFVDTGTATLNKNPWVAGQNRRTLSGAGVGFNWVDNDNFVVKAYYARKLGNAIAMSAPDK 548

Query: 555 SVRGWVTLSKAF 566
           + R W+  +K F
Sbjct: 549 TGRFWLQAAKYF 560


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,001,218
Number of extensions: 40334
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 479
Effective length of database: 713,682
Effective search space: 341853678
Effective search space used: 341853678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)