BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1016.p
         (246 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg...    55   3e-09

>gi|134095895|ref|YP_001100970.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 28/173 (16%)

Query: 6   SLTDRLAHFIAERALPPGRKLPSERTLAAEFGVSRSSLREAIRVLSSQGLLVARHGGGTF 65
           ++ + L + I E  L PG KL +ER +    G+SR+ LREA++VL+S+GL+      G F
Sbjct: 27  AVVEHLQNLIIEGVLAPGMKL-NEREVCERLGISRTPLREAMKVLASEGLIDIAPNRGAF 85

Query: 66  VAGQDSAALTDPIAEALLPLAPLARSDAGYWKDVAEIRSSLEGDAAYFAALR---ANEQD 122
           V+  +                     D   W +  E+ S LE  +   AA R   A   D
Sbjct: 86  VSKMN---------------------DNEIW-EAFEMMSGLEALSGELAAERISPAEIAD 123

Query: 123 RRRLRQAYLEVSTAPLDDLAAQARTDAAFHLAIAQASRNVVLRQVMSGLLRLL 175
            + L +A L V  A  +DL      +   H  I +A+RN +LRQ+   + R L
Sbjct: 124 IKVLHEAML-VCRAQ-NDLPGYYSRNQTIHNKINEAARNSMLRQIYLSINRRL 174


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 372,023
Number of extensions: 13233
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 167
Effective length of database: 740,042
Effective search space: 123587014
Effective search space used: 123587014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)