BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1013.p
         (152 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096090|ref|YP_001101165.1| hypothetical protein HEAR2931 [...   127   2e-31

>gi|134096090|ref|YP_001101165.1| hypothetical protein HEAR2931
           [Herminiimonas arsenicoxydans]
          Length = 135

 Score =  127 bits (320), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 80/123 (65%), Gaps = 4/123 (3%)

Query: 25  RAWIVLQNVQEVETWIDTYNRELQAVVFRHKMNTVNAGQGICFTLELGGQIYLHTTPEGQ 84
           R WIVL+   +VETWID  NR +Q +    K      G GICF L  GG+I++HTT EG 
Sbjct: 16  RPWIVLKTTYDVETWIDHQNRSIQQLGKSSKA----GGWGICFGLSEGGEIFMHTTAEGD 71

Query: 85  ILLDVSEEAAWAAPVISAAANVAAPAGSVWVLPPDTLTQLILGLSGLIATSQFVLRHEYR 144
           +LLDV+ EA W AP+I+AA  VA P   +W LP D LTQL+ GLS LIAT++ V+ H + 
Sbjct: 72  VLLDVTPEADWVAPLIAAATQVAVPNTQIWALPGDRLTQLVFGLSSLIATTRLVVEHNFN 131

Query: 145 LGK 147
           L K
Sbjct: 132 LRK 134


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 275,347
Number of extensions: 8815
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 78
Effective length of database: 756,517
Effective search space: 59008326
Effective search space used: 59008326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)