BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1010.p (270 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 460 e-131 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 170 7e-44 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 161 3e-41 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 150 7e-38 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 149 1e-37 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 460 bits (1183), Expect = e-131, Method: Compositional matrix adjust. Identities = 220/271 (81%), Positives = 243/271 (89%), Gaps = 1/271 (0%) Query: 1 MDNLNGKFIDIHGVEMVFHTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAG 60 MDN+NGKFIDI EM FHTKKG F+AL +INLTVAKG+F+TLIGHSGCGKSTLLNLIAG Sbjct: 1 MDNINGKFIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAG 60 Query: 61 LLQPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLR 120 L Q + G+LLC NREI GP+PERAVVFQNHSLLPWLTCYEN+YL VERVFG E + +LR Sbjct: 61 LTQSTGGMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLR 120 Query: 121 DRTRAALALVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH 180 RTRAAL+LVGLT AE KRPNEISGGMKQRVGIARAL+MEPKVLLMDEPFGALDALTRAH Sbjct: 121 ARTRAALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAH 180 Query: 181 LQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRDRVM 240 LQDELLKIVA T STVVMVTHDVDEAVLLSD+IVM+TNGP+ATIGE+LEV LA PR+RV Sbjct: 181 LQDELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEVKLAHPRERVA 240 Query: 241 LAQDAQYGQYRTTVLEFLYRKQAHP-AREAA 270 LA+DAQY +YRT VLEFLY +Q+HP A+EAA Sbjct: 241 LAKDAQYSEYRTAVLEFLYHRQSHPAAKEAA 271 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 170 bits (430), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 141/234 (60%), Gaps = 8/234 (3%) Query: 8 FIDIHGVEMVFHTKKGA-FHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSE 66 I++ GV F T G L +N +A+G+ V L+G SG GKSTLL ++AGL+ + Sbjct: 6 LIELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQ 65 Query: 67 GVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAA 126 G +EI P A+VFQ+ +L PWLT +N+ LG+E A + R + R A Sbjct: 66 GTAKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREK---RADAM 122 Query: 127 LALVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELL 186 L L+GL P E+SGGMKQRVGIAR L P VLLMDE F ALD LT L+D++L Sbjct: 123 LDLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDIL 182 Query: 187 KIVAKTE---STVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRD 237 ++ + +++V+H+++EAV+++DRI+++++ P E+ +NL RPR+ Sbjct: 183 EMWEEKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEI-RINLPRPRN 235 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 161 bits (408), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 129/228 (56%), Gaps = 3/228 (1%) Query: 1 MDNLNGKFIDIHGVEMVFHTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAG 60 M+ L +D+ GV + + TK+ A ++ V K L+G SGCGKSTLL + G Sbjct: 1 MNGLPQPLLDVRGVTLQYKTKEHLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGG 60 Query: 61 LLQPSEGVLLCANREIGGPAPERAVVFQNHSLLP-WLTCYENIYLGVERVFGASENRTQL 119 + P+EG + ++ I P +R +VFQ LP W T +N+ + + + Sbjct: 61 YMMPTEGEMRLHDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPL--LASGKLKGKEA 118 Query: 120 RDRTRAALALVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRA 179 D+ + V L+ + P+ +SGGMKQRV IAR +AMEP +LLMDEP+ ALDALTR Sbjct: 119 EDKAMYYIEKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRK 178 Query: 180 HLQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEV 227 +QDELL++ T TV+ VTH + EAV + +RI++++ P E+ Sbjct: 179 KMQDELLQLWDDTHFTVLFVTHSIAEAVKIGNRILLLSPHPGQVTAEL 226 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 150 bits (379), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 7/213 (3%) Query: 31 INLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEGVLLCANREIGGPAPERAVV---F 87 I+L++ G+F TL+G SGCGK+TLL +IAG +P G +L ++ G PE+ VV F Sbjct: 22 ISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPEQRVVRTVF 81 Query: 88 QNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALALVGLTAAENKRPNEISGGM 147 QN++L P +T NI +E A+ +++++ + AL V LT + P+E+SGG Sbjct: 82 QNYALFPHMTVAGNIAFPLEM---ANTPKSEIKQKVDEALEDVRLTGFAARYPHELSGGQ 138 Query: 148 KQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAV 207 +QRV IARAL PK+LL+DEP ALDA R +Q EL+ + + T V VTHD EA+ Sbjct: 139 RQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYVTHDQAEAL 198 Query: 208 LLSDRIVMMTNGPAATIGEVLEVNLARPRDRVM 240 LS RI +M G + E + + PR R + Sbjct: 199 ALSHRIAVMNKGNIEQLDEPTRI-YSYPRSRFV 230 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 149 bits (377), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 19 HTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEG-VLLCANREIG 77 + K G F AL +++L G+ L+G SGCGK+TLL +IAGL QP G VLL Sbjct: 9 NKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASA 68 Query: 78 GPAPERAV--VFQNHSLLPWLTCYENIYLGVE-RVFGASENRTQLRDRTRAALALVGLTA 134 ER V VFQ+++L +T +ENI G+ R + + ++++ L LV L Sbjct: 69 RHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLDW 128 Query: 135 AENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTES 194 ++ P ++SGG +QR+ +ARALA+EP+VLL+DEPFGALDA R L+ L ++ + Sbjct: 129 LADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188 Query: 195 TVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEV--NLARP 235 T + VTHD +EA+ ++D+IV+M G IG +V N A P Sbjct: 189 TSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASP 231 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 489,533 Number of extensions: 19023 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 46 Length of query: 270 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 190 Effective length of database: 736,747 Effective search space: 139981930 Effective search space used: 139981930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)