BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1009.p (318 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas... 393 e-111 gi|134096489|ref|YP_001101564.1| putative transmembranee ABC tra... 61 8e-11 >gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease [Herminiimonas arsenicoxydans] Length = 304 Score = 393 bits (1010), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/255 (80%), Positives = 230/255 (90%) Query: 64 LFMRVVPPLLGVALLVLVWQIIALKTASFPTPWVTLKEAGVMFSDPFYRNSPNDQGIGWN 123 FM VVPP+ GV LVLVW+II+ K + P+P VTLK A +F+DPFY N PNDQGIGWN Sbjct: 50 FFMSVVPPIFGVLFLVLVWEIISAKNSGIPSPAVTLKSAIDLFADPFYSNGPNDQGIGWN 109 Query: 124 VLASLQRVGLGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFK 183 +LASL+RV +GFGLAALVGIPLGF IGR +FL+ MF PIISLL+PVSPLAWLPIGLLVFK Sbjct: 110 ILASLKRVAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFK 169 Query: 184 SANPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYM 243 +A+PAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWK++TKILFPSVLPYM Sbjct: 170 AADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPYM 229 Query: 244 LTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQL 303 LTGVRL+IGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNV HIIIAIVVIG+VGL+LEQ+ Sbjct: 230 LTGVRLAIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVAHIIIAIVVIGIVGLVLEQI 289 Query: 304 LVALAKAFTYEQVNH 318 LV +A+ FTYE V + Sbjct: 290 LVGIARVFTYEDVKN 304 >gi|134096489|ref|YP_001101564.1| putative transmembranee ABC transporter protein [Herminiimonas arsenicoxydans] Length = 308 Score = 60.8 bits (146), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 10/193 (5%) Query: 128 LQRVGLGFGLAALVGI-PLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSAN 186 L G G LAAL+ + + IGR +FL + S+ P+ +A LP+ LL F Sbjct: 116 LMGYGAGLVLAALLTVFAITSRIGR-DFLE----TLTSMFNPLPAIALLPLSLLWFGLGT 170 Query: 187 PAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTG 246 + ++ + +W + +NT G Q V V LS + + +IL P+ P +LTG Sbjct: 171 GSLVFVLIHSVVWAVALNTHSGFQSVSTTLRMVGHNYGLSGLRYVFQILIPAAFPSILTG 230 Query: 247 VRLSIGTAWLVIVAAEML----TGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQ 302 +++ AW ++AAE++ +G G+G+++++ N L +P + ++ + ++GL +E Sbjct: 231 LKIGWAFAWRTLIAAELVFGVSSGSGGLGWFIYENKNQLEIPSVFAGLLTVIMIGLFVEN 290 Query: 303 LLVALAKAFTYEQ 315 + + T ++ Sbjct: 291 FIFRTIEQCTVQK 303 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 505,969 Number of extensions: 17397 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 3 Length of query: 318 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 236 Effective length of database: 730,157 Effective search space: 172317052 Effective search space used: 172317052 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)