BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1008.p
         (433 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093700|ref|YP_001098775.1| putative nitrate transporter Nr...   692   0.0  

>gi|134093700|ref|YP_001098775.1| putative nitrate transporter NrtA
           [Herminiimonas arsenicoxydans]
          Length = 416

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/404 (80%), Positives = 359/404 (88%)

Query: 29  RRQLLQGAALATGAGMMGLATGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMASVLGFDK 88
           RR +L+     T +   GLAT G WAAGSDKPEKEEVK+GFIPLTDCASVVMASV+GFDK
Sbjct: 12  RRTVLKAGTAITASAFGGLATQGVWAAGSDKPEKEEVKVGFIPLTDCASVVMASVMGFDK 71

Query: 89  KYGIKIVPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVLMGLNHNG 148
           KYGIKIVP+KE+SWAGVRDKL NGELDAAHVLYGLIYGV  GIGG KKDMAVLM +N+NG
Sbjct: 72  KYGIKIVPTKESSWAGVRDKLVNGELDAAHVLYGLIYGVHGGIGGAKKDMAVLMSINNNG 131

Query: 149 QAITLSKKLADKGAVDGASLYKLMQSDKREYTFAQTFPTGTHAMWLYYWLAANGIHPMKD 208
           QAI+LSKKLADKGAV+GA L KLMQ +KREYTFAQTFPTGTHAMWLYYWLA  GI+PMKD
Sbjct: 132 QAISLSKKLADKGAVNGAGLAKLMQMEKREYTFAQTFPTGTHAMWLYYWLATYGINPMKD 191

Query: 209 AKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPEKVLGTS 268
           AKVITVPPPQMVANMRVGNMDGFCVGEPW HRAIVDG+GITA T+QDIWKDHPEKVLGT+
Sbjct: 192 AKVITVPPPQMVANMRVGNMDGFCVGEPWNHRAIVDGIGITAATSQDIWKDHPEKVLGTT 251

Query: 269 REFVQKYPNTCRAMMAAILDASKWIDASLVNKNKMAEVIADKSYVNTSKDVIDQRILGRY 328
            E+V KYPNT RAM AA+L+AS+WIDASL NKNKMAE IA KSYVNTS DVI+QRILGRY
Sbjct: 252 SEWVAKYPNTARAMTAAVLEASRWIDASLSNKNKMAETIAAKSYVNTSVDVINQRILGRY 311

Query: 329 QNGLGKTWDDPNYMKFYEEGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVAKSVNQID 388
            +G+GKTWDDPNYMKFY +G VNFP+LSDGMWFMTQH+RWGL K +PDY+  AKS+N+ID
Sbjct: 312 SDGMGKTWDDPNYMKFYNDGAVNFPYLSDGMWFMTQHKRWGLAKGEPDYMGTAKSINRID 371

Query: 389 LYKDAAAMTKTPLPKDVMRSSKLMDGTVWDGKNPAAYAQSFKIK 432
           LYK+AA M   P+PK+VMRSSKL+DG VWDGKNP AYA+SFKIK
Sbjct: 372 LYKEAATMANVPVPKNVMRSSKLIDGVVWDGKNPKAYAESFKIK 415


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 821,492
Number of extensions: 32877
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 349
Effective length of database: 723,567
Effective search space: 252524883
Effective search space used: 252524883
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)