BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1002.p (691 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095694|ref|YP_001100769.1| putative regulator protein [Her... 440 e-125 gi|134095063|ref|YP_001100138.1| hypothetical protein HEAR1862 [... 141 8e-35 gi|134094860|ref|YP_001099935.1| putative transmembrane nitrate/... 61 2e-10 >gi|134095694|ref|YP_001100769.1| putative regulator protein [Herminiimonas arsenicoxydans] Length = 700 Score = 440 bits (1132), Expect = e-125, Method: Compositional matrix adjust. Identities = 250/564 (44%), Positives = 357/564 (63%), Gaps = 6/564 (1%) Query: 109 ALLLLLLGLGSLVHALMYALGWLPLDSTHPISPLAISPLLSLGFVLMAGSLLLHDWRLLG 168 ALL G+ + + L +GW D+ S + +PL + GF L LLL D+R G Sbjct: 130 ALLRYFFGIDAGLEYLFVKMGWA--DN----SWIKQAPLTAFGFALAGTGLLLLDYRTSG 183 Query: 169 GYYPAEYLAFTLMALSAIPLVGYLYDVSQFIYLQFPLPVSLLSSLVLALLGAALLMARPG 228 G+YP+EY+AFTL+ + IPL+G+LY+V + S+ +L +L ARP Sbjct: 184 GHYPSEYVAFTLVGVMGIPLIGHLYNVMAVDVADAARAMLPFISVTFLILALGMLSARPM 243 Query: 229 HPLMAVILRIAPGGQMLRHLLPQTLFLLLAFSLLLNWGMSHGWILPELVLPTLTLINGVI 288 H LM + +PGG +LR LLP +L LL+ + WG+ H + + P L L++G++ Sbjct: 244 HRLMKLWNSTSPGGPILRRLLPNSLLLLVFLDFAIKWGVRHHFYDQDKASPLLILLSGMV 303 Query: 289 VLFIFWGSASRLDSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPAT 348 + +F +A+ L+ EY +R LAE++ALL AVS++T D IFVK+R G MIFANPA Sbjct: 304 LFIMFCRTAALLNREYEDRQIGEAALAESNALLRAVSDNTPDAIFVKDRSGRMIFANPAK 363 Query: 349 LHKLGKTWEETMYRSSRELFLLPEEAEAVDRDDRRVMASGKPEKLEQTLHLPEGVVTFQT 408 L LGK EE + S EL+L ++AE V +DR V+ SG+P E T GV T + Sbjct: 364 LRLLGKEREEVIGLRSEELYLEMQDAERVIIEDRSVIESGEPRTFETTTKYVHGVRTMHS 423 Query: 409 AKVPWFGKDGSVQGVIGISTDITERKQAEDELRQRESQLEKTVVQRTALLRELTNHLETV 468 K PW +G + G++GISTDITERK+ ED L+ E+QLE V RT + EL HLET Sbjct: 424 TKAPWLDANGRLMGLVGISTDITERKRMEDALKAHETQLEALVAARTMEVSELIGHLETT 483 Query: 469 REEEKRAIARELHDNMGASLTALSMHLEGVYQILPADDKWADRKTRMQGLMKSLVATTRR 528 REEEKRAIARELHD++GA+LTAL+MHL ++Q +PA+ K+ +R +++ L+ S+ TRR Sbjct: 484 REEEKRAIARELHDDLGAALTALNMHLSLIFQQMPAEPKFTERSVKIKALLSSITDATRR 543 Query: 529 IQTELRPNTLDLFGLKAAISEQLDELHERTGIICRASLPDEDVEVGHEMEIAIYRMLQEM 588 IQ LRP+ LD+FG+K AI+EQ E + TG++C +LPD+ + ++IA++R++QE Sbjct: 544 IQNGLRPDKLDVFGIKIAIAEQAAEFEKYTGVVCNVNLPDDQLTYAARVDIALFRIVQEA 603 Query: 589 LNNVTKHAKASKVDVILDVDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGG 648 LNN+ KHAKAS VDV+LD +D + LTVRD+G+GIP R +N T+GLRG+RER + GG Sbjct: 604 LNNIAKHAKASHVDVVLDDTDDEIVLTVRDNGIGIPLSRPNNMITHGLRGMRERVAYLGG 663 Query: 649 EVDIRSTPGKGALISISLPLNGQD 672 V I GKG I +++P ++ Sbjct: 664 TVRIGGAEGKGTTIVVTIPKTAEN 687 >gi|134095063|ref|YP_001100138.1| hypothetical protein HEAR1862 [Herminiimonas arsenicoxydans] Length = 478 Score = 141 bits (356), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 141/245 (57%), Gaps = 13/245 (5%) Query: 425 GISTDITERKQAEDELRQRESQLEKTVVQRTALLRELTNHLETVREEEKRAIARELHDNM 484 G+ T+IT + ++E +++ A L EL+ H++ V+E+E+ IARE+HD++ Sbjct: 242 GLMTNITASRLEQEE-----------IIRSRAQLAELSAHIDIVKEQERTHIAREIHDDL 290 Query: 485 GASLTALSMHLEGVYQILPADD-KWADRKTRMQGLMKSLVATTRRIQTELRPNTLDLFGL 543 G +LTA+ M L + + LP + + ++ ++ L+ + + RI LRP LD FGL Sbjct: 291 GGNLTAIKMALALLTRRLPRKNVELIEKADYVESLVDRTIESVHRIAGNLRPGILD-FGL 349 Query: 544 KAAISEQLDELHERTGIICRASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDV 603 AAI Q E ++ GI C+ S ++++ + A++R+ QE L N+ KHAKAS V V Sbjct: 350 VAAIDWQGREFEKQVGIPCQFSSNKTEIDLALDQATALFRIFQEALTNIAKHAKASLVTV 409 Query: 604 ILDVDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALIS 663 L +V L + D+G GI R+ K++G+RG+ ER+ GG + + + P G +++ Sbjct: 410 QLVHTRQYVRLEIVDNGRGIQMTDRNKPKSFGIRGMVERSIAMGGSLSVSTAPKGGTIVA 469 Query: 664 ISLPL 668 I++PL Sbjct: 470 INVPL 474 >gi|134094860|ref|YP_001099935.1| putative transmembrane nitrate/nitrite sensor kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 672 Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 100/206 (48%), Gaps = 18/206 (8%) Query: 471 EEKRAIARELHDNMGASLTALSMHLEGVYQILPADDKWADRKTRMQGLMKSLVATTRRIQ 530 EE+ +A+ LHD++ LT L++ ++ + D R + ++ +L A Sbjct: 467 EERNLVAQGLHDSIAQGLTFLNLQVQ-----MLDDSLQKGRLKEVAEIVPALRAGVNESY 521 Query: 531 TELRPNTLDLFG------LKAAISEQLDELHERTGIICRASLPDEDVEVGHEMEIAIYRM 584 ++R L+ L ++ +D+ ++GI + + +E ++ I + Sbjct: 522 EDIRELLLNFRSRLIKGDLINSLQTTIDKFRRQSGITVNFVASGDGAPLPYEQQLQIMFI 581 Query: 585 LQEMLNNVTKHAKASKVDVILDVDEDHVALTVRDDGVGIPEE----RRDNHKTYGLRGLR 640 +QE L+N+ KHA ASKV++ L ++D +L++ D+G G + + ++H G+ +R Sbjct: 582 VQEALSNIRKHASASKVEIRLQDNQD-FSLSIHDNGGGFDADTLLSKGESH--VGINIMR 638 Query: 641 ERATFFGGEVDIRSTPGKGALISISL 666 ERA ++ STP +G + + L Sbjct: 639 ERAQRIHASFEVHSTPLQGTTVRLQL 664 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,085,582 Number of extensions: 39577 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 4 Length of query: 691 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 603 Effective length of database: 710,387 Effective search space: 428363361 Effective search space used: 428363361 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)