BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1001.p
         (169 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095693|ref|YP_001100768.1| response regulator [Herminiimon...   122   7e-30

>gi|134095693|ref|YP_001100768.1| response regulator [Herminiimonas
           arsenicoxydans]
          Length = 141

 Score =  122 bits (307), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 93/128 (72%), Gaps = 4/128 (3%)

Query: 17  DSDGTPLQIFLVEDSEDVRDLIVESLAEIAGVHLVGHAESEREALRHLQLHSYDVLILDI 76
           D+   PL IFLVEDS DVR+L++E+LA I GV + G +ESE +AL  L +   D+LI+DI
Sbjct: 7   DAGCNPLHIFLVEDSLDVRELMIENLAMIPGVVVSGVSESESDALAQLDMQPCDILIVDI 66

Query: 77  QLKQGNGMSLLQSLARSNTRRQSE-VKVVFSNHVSATYRRVGVQCGVQHFFDKSSELPLL 135
           QLK+GNG++LL+ L+    RR S+ VK++ SN+ +  +RRVG Q GV HFFDK+SE P L
Sbjct: 67  QLKKGNGINLLRQLSE---RRTSDLVKIICSNNSTEIFRRVGRQYGVDHFFDKTSEFPQL 123

Query: 136 CDLLEELA 143
            +L+ +L+
Sbjct: 124 FNLVRDLS 131


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 279,526
Number of extensions: 9227
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 94
Effective length of database: 753,222
Effective search space: 70802868
Effective search space used: 70802868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)