BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1000.p (209 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095692|ref|YP_001100767.1| response regulator [Herminiimon... 355 e-100 gi|134095064|ref|YP_001100139.1| LuxR family transcriptional reg... 215 1e-57 gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regula... 84 4e-18 gi|134093850|ref|YP_001098925.1| putative two-component system r... 82 1e-17 gi|134096209|ref|YP_001101284.1| response regulatory protein [He... 76 1e-15 >gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans] Length = 210 Score = 355 bits (912), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/210 (83%), Positives = 192/210 (91%), Gaps = 1/210 (0%) Query: 1 MTKILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60 M KILVVDDHAVVRAGVQ+FI+++P M I GEA+TA+EAIRLVR QDWDIVLLDI MPDK Sbjct: 1 MIKILVVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINMPDK 60 Query: 61 SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120 SGVEVLKQIKREKPELPVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELV AI TILR Sbjct: 61 SGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTAIQTILR 120 Query: 121 GHKYISYGVAELLTSE-PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179 GHKYIS+ VAELLT+E +++KPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTV Sbjct: 121 GHKYISHTVAELLTAEVDPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTV 180 Query: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLID 209 STYR+RVLQKM+M NNA IIYYAIK NLID Sbjct: 181 STYRARVLQKMNMENNAGIIYYAIKQNLID 210 >gi|134095064|ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 215 Score = 215 bits (547), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 101/208 (48%), Positives = 151/208 (72%), Gaps = 1/208 (0%) Query: 3 KILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSG 62 K+L+ DDHA+VR G++ +++ + + G A EAIRL R +++LLDI+MPD+SG Sbjct: 8 KVLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISMPDRSG 67 Query: 63 VEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGH 122 +EVLKQ+++E P++ +LMLSMH E +YA++ L++GA+GY+ K++ ELV AI + G Sbjct: 68 IEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAELVTAIRQVAAGR 127 Query: 123 KYISYGVAELLTSEPVDS-EKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVST 181 KYIS +A+ L ++ D+ E PLHETLS REY+ + G+ V+ IA EL LSVKT+S Sbjct: 128 KYISAELAQELANQINDNHETPLHETLSDREYQTLTMIASGKTVSDIAAELVLSVKTISM 187 Query: 182 YRSRVLQKMSMTNNADIIYYAIKNNLID 209 YRSR+LQKM + +NA++ +YAIKN+L+D Sbjct: 188 YRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas arsenicoxydans] Length = 235 Score = 84.3 bits (207), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%) Query: 4 ILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGV 63 +L++DDH + R+G++ + P + GEA+ E I+ R D+VLLD+ MP SG+ Sbjct: 20 VLLIDDHTLFRSGIRSLLQRYPEFSVVGEAADGVEGIKRARQLQPDVVLLDLNMPGISGL 79 Query: 64 EVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAIN-----TI 118 + L+ + ++ P V+ML++ ++ L+SGA GY+ K A LV AI Sbjct: 80 QTLQLMLQDCPNTAVIMLTVSEDAEDLGVALQSGARGYLIKNIDADYLVRAIQRAAAGEA 139 Query: 119 LRGHKYISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKT 178 + S +A+L + + + L+ RE +I L +G+ IA L ++ T Sbjct: 140 VVAEAMTSKLIAQLQNAGQRTEVRSELDKLTPRERDILACLARGESNKLIARTLDVADST 199 Query: 179 VSTYRSRVLQKMSMTNNADIIYYAI 203 V + +L+K+++++ +A+ Sbjct: 200 VKIHVQNILKKLNLSSRVQAAIFAV 224 >gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 115/215 (53%), Gaps = 8/215 (3%) Query: 1 MTKILVVDDHAVVRAGVQHFISEI--PSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMP 58 + +L+V+D ++R ++ + ++ S + S AE +V Q + L+D+ +P Sbjct: 18 LAPVLLVEDEPLIRRRLEGLLLQLGYSSDALVMTGSLAEARACMV-NQPIALALVDLGLP 76 Query: 59 DKSGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTI 118 D SG++++ ++ P LP+L++S + LR+GA+GYV KE E+ +I ++ Sbjct: 77 DGSGIDLIAEMHMADPALPILVISAWSTEDAILAALRAGATGYVLKERDDMEVALSIRSV 136 Query: 119 LRG----HKYISYGVAELLTSEPVDSEK-PLHETLSQREYEIFYKLGQGQGVTQIADELC 173 LRG +I+ + + L + + EK P +ETLS RE EI + QG +I+++L Sbjct: 137 LRGGAPIDPFIARRIIDELRPKTMPHEKAPNNETLSPRESEILGLVAQGLANREISEQLH 196 Query: 174 LSVKTVSTYRSRVLQKMSMTNNADIIYYAIKNNLI 208 LS T+ + + +K+++++ I+ A L+ Sbjct: 197 LSRYTIECHIKHIYRKLAVSSRTKAIHEARSRGLL 231 >gi|134096209|ref|YP_001101284.1| response regulatory protein [Herminiimonas arsenicoxydans] Length = 238 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 12/217 (5%) Query: 4 ILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGV 63 +LVV+D R + I + P++++ + A+ + Q D++L+D+ +PD SG+ Sbjct: 13 VLVVEDDVATRRALCLGIKKEPALKLLAALDCVKSALDWLLHQPVDVLLVDLGLPDGSGI 72 Query: 64 EVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHK 123 ++++ P +++++ + V + +GASGYV K+A ++ A+ + G Sbjct: 73 DIIRFCADRHPSCNIMVITTSSDQGSVVDSIEAGASGYVLKDAGPLDIGRALMELHAGGS 132 Query: 124 YISYGVAELLTSEPVDSEK----------PLHET--LSQREYEIFYKLGQGQGVTQIADE 171 IS +A + + D K P + L++RE I + +G ++A E Sbjct: 133 PISPVIARKVLARMRDGNKADGAVRAENAPGGQKVFLTRREATILDLIARGDSYCEVARE 192 Query: 172 LCLSVKTVSTYRSRVLQKMSMTNNADIIYYAIKNNLI 208 L LSV TV T+ + K+S+ + +Y A + L+ Sbjct: 193 LALSVGTVQTHIKNIYDKLSVHSRGAAVYEAHRRGLL 229 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 353,686 Number of extensions: 12683 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 13 Length of query: 209 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 131 Effective length of database: 743,337 Effective search space: 97377147 Effective search space used: 97377147 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)