BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0999.p
         (109 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094294|ref|YP_001099369.1| putative lipoprotein [Herminiim...   131   9e-33
gi|134095592|ref|YP_001100667.1| hypothetical protein HEAR2415 [...    65   6e-13

>gi|134094294|ref|YP_001099369.1| putative lipoprotein
           [Herminiimonas arsenicoxydans]
          Length = 103

 Score =  131 bits (329), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 79/103 (76%)

Query: 6   MSLTKRFLGFFLALFMVSLVGCASSPGKEGTGEYVDDAVITTKVKAAIFNEPNLKSSEIN 65
           M+ +K     F AL + ++VGCAS+  KEGT EY++D+V+TTKVKAAI NEP LKS+EIN
Sbjct: 1   MTKSKWITTLFAALMLTAVVGCASTDKKEGTAEYIEDSVLTTKVKAAILNEPGLKSAEIN 60

Query: 66  VETYKGVVQLSGFVSSSTSAARATELARGVKGVVSVRNDLRLK 108
           VET+KG VQLSGFVS     A+A  +ARGVKGV +V+NDLR K
Sbjct: 61  VETFKGTVQLSGFVSEKQDIAKAGAVARGVKGVQAVKNDLRQK 103


>gi|134095592|ref|YP_001100667.1| hypothetical protein HEAR2415
           [Herminiimonas arsenicoxydans]
          Length = 149

 Score = 65.5 bits (158), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%)

Query: 37  GEYVDDAVITTKVKAAIFNEPNLKSSEINVETYKGVVQLSGFVSSSTSAARATELARGVK 96
           G  +DD VITTKVK A+  + ++K  ++NV+T  GVV LSG VS+ T   RA ++A   +
Sbjct: 76  GTIIDDTVITTKVKTALLADSDIKGLDVNVDTSHGVVTLSGAVSNQTQIDRAGKIAGDTE 135

Query: 97  GVVSVRNDLRLKQ 109
           GV S+ N+L +K+
Sbjct: 136 GVASIINNLTIKK 148


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.130    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 159,483
Number of extensions: 4951
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 40
Effective length of database: 772,992
Effective search space: 30919680
Effective search space used: 30919680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)