BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0998.p
         (127 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095697|ref|YP_001100772.1| putative signal peptide [Hermin...    74   2e-15

>gi|134095697|ref|YP_001100772.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 178

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 76/119 (63%), Gaps = 4/119 (3%)

Query: 1   MKKIIATMIFGAAAIGMQGAALAADPAATQ--YKADKSKADADYKAAKKKCSPMKGNDKD 58
           MKK ++ ++  +A+ G    + A+ PA  +  Y A K +ADADYKAAK  C   KGN KD
Sbjct: 1   MKKTLSMLLLASASFGFVAVSHAS-PAELKATYDATKKQADADYKAAKAACDSHKGNAKD 59

Query: 59  VCEKQAKADHESAIADAKAKRKGVE-ADKDAQKDKNDANYDVAKEKCDAMSGEAKDKCV 116
           VC+K+AK  H   IA+A+A  KG + A K A+ D  DANY++AKEKCD  +G  KD CV
Sbjct: 60  VCQKEAKLAHVKTIAEAEATYKGTDKAHKKARMDIADANYELAKEKCDDQTGNNKDVCV 118



 Score = 55.5 bits (132), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 58/79 (73%)

Query: 38  ADADYKAAKKKCSPMKGNDKDVCEKQAKADHESAIADAKAKRKGVEADKDAQKDKNDANY 97
           ADA+Y+ AK+KC    GN+KDVC K+AKA   +A+ADAKA ++   A K+A++DK DAN 
Sbjct: 95  ADANYELAKEKCDDQTGNNKDVCVKEAKAAKTAAVADAKASKEISAARKEAREDKADANA 154

Query: 98  DVAKEKCDAMSGEAKDKCV 116
            V KEKCDA++G  K +C+
Sbjct: 155 SVQKEKCDALAGAEKTRCL 173


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.124    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 108,375
Number of extensions: 1850
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 55
Effective length of database: 763,107
Effective search space: 41970885
Effective search space used: 41970885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)